RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NXPH4O95158 308 aa15.72■□□□□ 0.11
CCDC88B-208ENST00000492980 IGKV3-20P01619 116 aa15.72■□□□□ 0.11
CCDC88B-208ENST00000492980 TSPOP30536 169 aa15.72■□□□□ 0.11
CCDC88B-208ENST00000492980 IFI27L1Q96BM0 104 aa15.72■□□□□ 0.11
CCDC88B-208ENST00000492980 DPH3P1Q9H4G8 78 aa15.72■□□□□ 0.11
CCDC88B-208ENST00000492980 HSBP1L1C9JCN9 74 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 KHDC1LQ5JSQ8 128 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 C14orf178Q8N769 122 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 DUX3Q96PT4 197 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 FLNAP21333 2647 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 LGALS9BQ3B8N2 356 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 LGALS9CQ6DKI2 356 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 OR1N2Q8NGR9 330 aa15.71■□□□□ 0.11
CCDC88B-208ENST00000492980 DPF1Q92782 380 aa15.7■□□□□ 0.1
CCDC88B-208ENST00000492980 ESM1Q9NQ30 184 aa15.7■□□□□ 0.1
CCDC88B-208ENST00000492980 NUTF2P61970 127 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-208ENST00000492980 FOXI2Q6ZQN5 318 aa15.7■□□□□ 0.1
CCDC88B-208ENST00000492980 OR9G4Q8NGQ1 327 aa15.7■□□□□ 0.1
CCDC88B-208ENST00000492980 TRAV12-2A0A075B6T6 113 aa15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 DUSP14O95147 198 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 KLHL30-AS1Q8NEE0 82 aa15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 AP1S3Q96PC3 154 aa15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 PEMTQ9UBM1 199 aa15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 MRPS16Q9Y3D3 137 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 GOLT1BQ9Y3E0 138 aa15.69■□□□□ 0.1
CCDC88B-208ENST00000492980 CD5LO43866 347 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 HIST2H2BDQ6DRA6 164 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 FOXC2Q99958 501 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 MUC4Q99102 2169 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 CCDC168Q8NDH2 2452 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 AKAP9Q99996 3911 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 CD7P09564 240 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 CDKN1BP46527 198 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 TMEM158Q8WZ71 300 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 C18orf15Q96N68 181 aa15.68■□□□□ 0.1
CCDC88B-208ENST00000492980 BATFQ16520 125 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 SPINK13Q1W4C9 94 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 RASL10AQ92737 203 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 DLX4Q92988 240 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 TP73-AS1Q9UF72 201 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 MYO9AB2RTY4 2548 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 AMTNQ6UX39 209 aa15.67■□□□□ 0.1
CCDC88B-208ENST00000492980 SONP18583 2426 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 AGRNO00468 2067 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 MGPP08493 103 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 LAGE3Q14657 143 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 POM121L12Q8N7R1 296 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 SMIM2Q9BVW6 85 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 YAE1D1Q9NRH1 226 aa15.66■□□□□ 0.1
CCDC88B-208ENST00000492980 KIF25-AS1Q9Y6Z4 181 aa15.65■□□□□ 0.1
CCDC88B-208ENST00000492980 TCAPO15273 167 aa15.65■□□□□ 0.1
CCDC88B-208ENST00000492980 TRAV2A0A0B4J234 112 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 IGHV3-16A0A0C4DH30 117 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 TMEM61Q8N0U2 210 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 RPL39LQ96EH5 51 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 LINC00315P59091 139 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 SUMO2P61956 95 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 C9orf85Q96MD7 179 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 C20orf78Q9BR46 151 aa15.64■□□□□ 0.09
CCDC88B-208ENST00000492980 KNCNA6PVL3 124 aa15.63■□□□□ 0.09
CCDC88B-208ENST00000492980 DEFB131AP59861 70 aa15.63■□□□□ 0.09
CCDC88B-208ENST00000492980 SLC25A34Q6PIV7 304 aa15.63■□□□□ 0.09
CCDC88B-208ENST00000492980 IGHV1OR15-1A0A075B7D0 117 aa15.62■□□□□ 0.09
CCDC88B-208ENST00000492980 SMIM17P0DL12 118 aa15.62■□□□□ 0.09
CCDC88B-208ENST00000492980 Q8N1Y9 231 aa15.62■□□□□ 0.09
CCDC88B-208ENST00000492980 MDFICQ9P1T7 246 aa15.62■□□□□ 0.09
CCDC88B-208ENST00000492980 HELZ2Q9BYK8 2649 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 DYNLRB2Q8TF09 96 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 JPT2Q9H910 190 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 DKK2Q9UBU2 259 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 A8MTW9 85 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 HLA-DRB4P13762 266 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 HLA-DRB4X5D2U9 266 aa15.61■□□□□ 0.09
CCDC88B-208ENST00000492980 ANKRD39Q53RE8 183 aa15.6■□□□□ 0.09
CCDC88B-208ENST00000492980 RAX2Q96IS3 184 aa15.6■□□□□ 0.09
CCDC88B-208ENST00000492980 ANK3Q12955 4377 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-208ENST00000492980 ODF1Q14990 250 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 DEFB114Q30KQ6 69 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 COL5A1-AS1Q5SY13 56 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 STPG4Q8N801 248 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 SORL1Q92673 2214 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 ATP5LO75964 103 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 COX8AP10176 69 aa15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 HINT1P49773 126 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-208ENST00000492980 H3BMM0 161 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 PPP1R17O96001 155 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 CD28P10747 220 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 ZNF124Q15973 351 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 C11orf44Q8N8P7 122 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 ZMAT5Q9UDW3 170 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 NUDT3O95989 172 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 PRSS1P07477 247 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 RNASE1P07998 156 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 RBMY1A1P0DJD3 496 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 RBMY1CP0DJD4 496 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 RBMY1FQ15415 496 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 LINC00469Q8N7U9 141 aa15.58■□□□□ 0.08
CCDC88B-208ENST00000492980 ITPR2Q14571 2701 aa15.57■□□□□ 0.08
CCDC88B-208ENST00000492980 A0A087WWL8 130 aa15.57■□□□□ 0.08
CCDC88B-208ENST00000492980 RBMY1BA6NDE4 496 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms