RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 Q9HAA7 133 aa9.16□□□□□ -0.94
COL6A3-211ENST00000491233 TNFSF18Q9UNG2 199 aa9.16□□□□□ -0.94
COL6A3-211ENST00000491233 IGHV3-30P01768 117 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 IGHV3-33P01772 117 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 GIPP09681 153 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-211ENST00000491233 IGHV3-30-3P0DP02 117 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 IGHV3-30-5P0DP03 117 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 MGST1P10620 155 aaKnown RBP9.15□□□□□ -0.94
COL6A3-211ENST00000491233 GCSHP23434 173 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 SAPCD1Q5SSQ6 148 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 LELP1Q5T871 98 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 RPL7L1Q6DKI1 246 aaKnown RBP9.15□□□□□ -0.94
COL6A3-211ENST00000491233 PTH2Q96A98 100 aa9.15□□□□□ -0.94
COL6A3-211ENST00000491233 FXYD6-FXYD2A0A087WZ82 144 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 IGLV5-52A0A0A0MRZ9 124 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 TRAV34A0A0B4J273 112 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 A0A1W2PRE2 83 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 LRCOL1A6NCL2 159 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 RNF222A6NCQ9 220 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 IBA57-AS1B1ANH7 110 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 ZNF726P1Q15940 193 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 Q5VSD8 79 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 ATP6V0E2Q8NHE4 81 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 LINC00479Q96M42 142 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 PARLQ9H300 379 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 ARL2-SNX15V9GYD0 113 aa9.14□□□□□ -0.95
COL6A3-211ENST00000491233 BORCS7-ASMTA0A0B4J1R7 106 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 IGKV3D-20A0A0C4DH25 116 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 CTXND1A0A1B0GTU2 59 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 IFNA7P01567 189 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 S100A4P26447 101 aaKnown RBP9.13□□□□□ -0.95
COL6A3-211ENST00000491233 UBE2G2P60604 165 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 Q86TA4 180 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 INO80EQ8NBZ0 244 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-211ENST00000491233 FRZBQ92765 325 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 GTSF1LQ9H1H1 148 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 BATF3Q9NR55 127 aa9.13□□□□□ -0.95
COL6A3-211ENST00000491233 PEX7O00628 323 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 INAFM2P0DMQ5 153 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 ASIPP42127 132 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 FGF8P55075 233 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-211ENST00000491233 HAMPP81172 84 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 Q6ZSN1 163 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 NTN5Q8WTR8 489 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-211ENST00000491233 FAT1Q14517 4588 aa9.12□□□□□ -0.95
COL6A3-211ENST00000491233 GAGE12JA6NER3 117 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 A8MWV9 139 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 H3BVH4 76 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 LINC00694P0DN24 101 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 GAGE1Q13065 139 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 GAGE4Q13068 117 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 GAGE5Q13069 117 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 LGALSLQ3ZCW2 172 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-211ENST00000491233 GAGE13Q4V321 117 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 ZFP2Q6ZN57 461 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 Q8N3U1 123 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 Q8N814 137 aa9.11□□□□□ -0.95
COL6A3-211ENST00000491233 FAM74A7A6NL05 159 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 FABP5P3A8MUU1 101 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 SMR3BP02814 79 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-211ENST00000491233 LAGE3Q14657 143 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 AKR1C8PQ5T2L2 129 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 OR2T35Q8NGX2 323 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 IL36BQ9NZH7 164 aa9.1□□□□□ -0.95
COL6A3-211ENST00000491233 B4DEV8 164 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 M0R036 132 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 PIK3CD-AS1Q5SR53 167 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 ZC2HC1AQ96GY0 325 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 TMEM70Q9BUB7 260 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 SAMD10Q9BYL1 202 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 JPT2Q9H910 190 aa9.09□□□□□ -0.95
COL6A3-211ENST00000491233 MAP1LC3B2A6NCE7 125 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 G3V3Q6 166 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 SH2D1AO60880 128 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 WFDC2Q14508 124 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 UFSP1Q6NVU6 142 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 C14orf178Q8N769 122 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-211ENST00000491233 HIST1H2BAQ96A08 127 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 NKX6-2Q9C056 277 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-211ENST00000491233 MAP1LC3BQ9GZQ8 125 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 Q9UF83 564 aa9.08□□□□□ -0.96
COL6A3-211ENST00000491233 VPS13BQ7Z7G8 4022 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 GRIFINA4D1Z8 144 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 KRBOX1C9JBD0 128 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 RHODO00212 210 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 ARPC5O15511 151 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 CRIP1P50238 77 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 SYT8Q8NBV8 401 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 OR11H4Q8NGC9 324 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 TM2D2Q9BX73 214 aa9.07□□□□□ -0.96
COL6A3-211ENST00000491233 ARMS2P0C7Q2 107 aa9.06□□□□□ -0.96
COL6A3-211ENST00000491233 UBE2G1P62253 170 aa9.06□□□□□ -0.96
COL6A3-211ENST00000491233 DNLZQ5SXM8 178 aa9.06□□□□□ -0.96
COL6A3-211ENST00000491233 FAM74A4Q5TZK3 123 aa9.06□□□□□ -0.96
COL6A3-211ENST00000491233 DAZ4Q86SG3 579 aaKnown RBP9.06□□□□□ -0.96
COL6A3-211ENST00000491233 DAZ3Q9NR90 486 aaKnown RBP9.06□□□□□ -0.96
COL6A3-211ENST00000491233 ZFP30Q9Y2G7 519 aa9.06□□□□□ -0.96
COL6A3-211ENST00000491233 A0A087WWC5 75 aa9.05□□□□□ -0.96
COL6A3-211ENST00000491233 TMSB15BA0A087X1C1 80 aa9.05□□□□□ -0.96
COL6A3-211ENST00000491233 TRAV8-3A0A0A6YYJ7 113 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms