RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 IGHV1OR15-1A0A075B7D0 117 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 TMSB15BA0A087X1C1 80 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 HIGD1CA8MV81 97 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 FAM3BP58499 235 aaPredicted RBP12.25□□□□□ -0.45
VIM-205ENST00000485947 Q6ZQT7 251 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 XCL2Q9UBD3 114 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 X6R8D5 127 aa12.25□□□□□ -0.45
VIM-205ENST00000485947 SMIM9A6NGZ8 99 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 IGLC6P0CF74 106 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 MED14OSP0DP75 135 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 TCL1AP56279 114 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 MUC21Q5SSG8 566 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 FER1L6-AS1Q8NA97 138 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 GTSF1Q8WW33 167 aa12.24□□□□□ -0.45
VIM-205ENST00000485947 TRGV11A0A075B6L2 103 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 IGHV4-28A0A0C4DH34 117 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 RBMY1A1P0DJD3 496 aaKnown RBP12.23□□□□□ -0.45
VIM-205ENST00000485947 RBMY1CP0DJD4 496 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 GZMBP10144 247 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 ASIPP42127 132 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 RBMY1FQ15415 496 aaKnown RBP12.23□□□□□ -0.45
VIM-205ENST00000485947 ZNF575Q86XF7 245 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 NUP35Q8NFH5 326 aa12.23□□□□□ -0.45
VIM-205ENST00000485947 GRIFINA4D1Z8 144 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 COLCA2A8K830 154 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 F2Z2F3 143 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 SNAI2O43623 268 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 TYMSP04818 313 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 CTRLP40313 264 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 NANOS2P60321 138 aaKnown RBP12.22□□□□□ -0.45
VIM-205ENST00000485947 ZNF705AQ6ZN79 300 aaPredicted RBP12.22□□□□□ -0.45
VIM-205ENST00000485947 ATP5L2Q7Z4Y8 100 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 BORCS7Q96B45 105 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 GOLT1BQ9Y3E0 138 aa12.22□□□□□ -0.45
VIM-205ENST00000485947 TGIF2-C20orf24A0A0A6YYL0 155 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 OR5AL1P0C617 328 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 S100A4P26447 101 aaKnown RBP12.21□□□□□ -0.45
VIM-205ENST00000485947 COX19Q49B96 90 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 LGALS9CQ6DKI2 356 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 RASL11AQ6T310 242 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 C1orf158Q8N1D5 194 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 PGLYRP4Q96LB8 373 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 LINC01587Q99440 93 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 TMEM208Q9BTX3 173 aa12.21□□□□□ -0.45
VIM-205ENST00000485947 SSBP4Q9BWG4 385 aaPredicted RBP12.21□□□□□ -0.45
VIM-205ENST00000485947 PCLOQ9Y6V0 5065 aa12.2□□□□□ -0.46
VIM-205ENST00000485947 LY6G6CO95867 125 aa12.2□□□□□ -0.46
VIM-205ENST00000485947 WDR73Q6P4I2 378 aa12.2□□□□□ -0.46
VIM-205ENST00000485947 LYZL1Q6UWQ5 148 aa12.2□□□□□ -0.46
VIM-205ENST00000485947 FAM210BQ96KR6 192 aa12.2□□□□□ -0.46
VIM-205ENST00000485947 FRAS1Q86XX4 4008 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 A0A1B0GUT8 65 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 TEX48A0A1B0GUV7 120 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 A0A1B0GW15 77 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 CBY3A6NI87 242 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 DEFB4AO15263 64 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 GNRH2O43555 120 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 RIGQ13278 110 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 CNFNQ9BYD5 112 aa12.19□□□□□ -0.46
VIM-205ENST00000485947 IGHV3-16A0A0C4DH30 117 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 H3BVH4 76 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 S100A8P05109 93 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 ARMS2P0C7Q2 107 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 RNASE3P12724 160 aaKnown RBP12.18□□□□□ -0.46
VIM-205ENST00000485947 CACNG7P62955 275 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 TPPP3Q9BW30 176 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 SCRT2Q9NQ03 307 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 TP53TG3Q9ULZ0 132 aa12.18□□□□□ -0.46
VIM-205ENST00000485947 TRAV10A0A0B4J240 114 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 A0A1B0GXF2 115 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 RAB5AP20339 215 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 HBBP68871 147 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 ZNF415Q09FC8 603 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 MRPL54Q6P161 138 aaKnown RBP12.17□□□□□ -0.46
VIM-205ENST00000485947 C9orf85Q96MD7 179 aa12.17□□□□□ -0.46
VIM-205ENST00000485947 IGHV4-4A0A075B6R2 117 aa12.16□□□□□ -0.46
VIM-205ENST00000485947 SPINK4O60575 86 aa12.16□□□□□ -0.46
VIM-205ENST00000485947 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.16□□□□□ -0.46
VIM-205ENST00000485947 RYR1P21817 5038 aa12.16□□□□□ -0.46
VIM-205ENST00000485947 IGHV3OR16-12A0A075B7B8 117 aa12.15□□□□□ -0.46
VIM-205ENST00000485947 MT-ND6P03923 174 aa12.15□□□□□ -0.46
VIM-205ENST00000485947 SPART-AS1P0CW21 52 aa12.15□□□□□ -0.46
VIM-205ENST00000485947 GNB1LQ9BYB4 327 aa12.15□□□□□ -0.46
VIM-205ENST00000485947 PHLDA3Q9Y5J5 127 aa12.15□□□□□ -0.46
VIM-205ENST00000485947 PLECQ15149 4684 aaKnown RBP12.14□□□□□ -0.47
VIM-205ENST00000485947 HTN1P15515 57 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 SPANXN1Q5VSR9 72 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 ZNF493Q6ZR52 646 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 GATD1Q8NB37 220 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 OR10AG1Q8NH19 301 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 TMEM263Q8WUH6 116 aaKnown RBP12.14□□□□□ -0.47
VIM-205ENST00000485947 SPXQ9BT56 116 aa12.14□□□□□ -0.47
VIM-205ENST00000485947 NXPH4O95158 308 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 HLA-DQA1P01909 254 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 NTF3P20783 257 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 RPS10P46783 165 aaKnown RBP12.13□□□□□ -0.47
VIM-205ENST00000485947 RRN3P1Q2M238 152 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 Q6ZTC4 211 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 ZFP82Q8N141 532 aa12.13□□□□□ -0.47
VIM-205ENST00000485947 C11orf72Q8NBR9 251 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms