RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CXorf65A6NEN9 183 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 SPINK4O60575 86 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 IGLC6P0CF74 106 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 SVBPQ8N300 66 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 TSKUQ8WUA8 353 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 SCRT2Q9NQ03 307 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 MRPL16Q9NX20 251 aaKnown RBP8.74□□□□□ -1.01
SDC1-206ENST00000482879 CELA1Q9UNI1 258 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 PHLDA3Q9Y5J5 127 aa8.74□□□□□ -1.01
SDC1-206ENST00000482879 NACAE9PAV3 2078 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 MUC21A0A0G2JKD1 596 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 MUC21A0A140T8X8 626 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 TEX48A0A1B0GUV7 120 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GAGE12BA1L429 117 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 C7orf77A4D0Y5 90 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 F2Z2F3 143 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 SNAI2O43623 268 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GAGE7O76087 117 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 OR5AL1P0C617 328 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GAGE12FP0CL80 117 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GAGE12GP0CL81 117 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GAGE12IP0CL82 117 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 DEFB130BP0DP73 79 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 DEFB130AP0DP74 79 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 SSTP61278 116 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 LGALS9BQ3B8N2 356 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 ZNF876PQ49A33 203 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 LYZL1Q6UWQ5 148 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 Q6ZTI0 123 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 GTSF1Q8WW33 167 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 SSBP4Q9BWG4 385 aaPredicted RBP8.73□□□□□ -1.01
SDC1-206ENST00000482879 GFRA4Q9GZZ7 299 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 TGP01266 2768 aa8.73□□□□□ -1.01
SDC1-206ENST00000482879 FAM231BA6NCW3 169 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 SNAPINO95295 136 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 DAD1P61803 113 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 RHEBQ15382 184 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 DMRTA1Q5VZB9 504 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 SYT8Q8NBV8 401 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 OR10AG1Q8NH19 301 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 C11orf45Q8TAV5 145 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 RASL10AQ92737 203 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 PTH2Q96A98 100 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 PGLYRP4Q96LB8 373 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 CTDSP1Q9GZU7 261 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 EDA2RQ9HAV5 297 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 RPS10P5Q9NQ39 176 aa8.72□□□□□ -1.01
SDC1-206ENST00000482879 SMIM27A0A1W2PRY6 76 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 HIGD1CA8MV81 97 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 M0R381 172 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 FOXA3P55318 350 aaPredicted RBP8.71□□□□□ -1.02
SDC1-206ENST00000482879 NANOS2P60321 138 aaKnown RBP8.71□□□□□ -1.02
SDC1-206ENST00000482879 CACNG7P62955 275 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 C12orf74Q32Q52 190 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 SPANXN1Q5VSR9 72 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 ZFP82Q8N141 532 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 LINC00612Q8N6U2 182 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 NAT8BQ9UHF3 227 aa8.71□□□□□ -1.02
SDC1-206ENST00000482879 TRGV2A0A075B6R0 118 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 A0A087WWC5 75 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 CTRLP40313 264 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 WDR73Q6P4I2 378 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 NUP35Q8NFH5 326 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 BORCS7Q96B45 105 aa8.7□□□□□ -1.02
SDC1-206ENST00000482879 PIK3CD-AS1Q5SR53 167 aa8.69□□□□□ -1.02
SDC1-206ENST00000482879 IGHV4-4A0A075B6R2 117 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 A0A1B0GUT8 65 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 NXPH4O95158 308 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 IGHV3-53P01767 116 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 NTF3P20783 257 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 FAM3BP58499 235 aaPredicted RBP8.68□□□□□ -1.02
SDC1-206ENST00000482879 TWIST1Q15672 202 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 ATRAIDQ6UW56 229 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 OR4C5Q8NGB2 326 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 NDUFAF3Q9BU61 184 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 CNFNQ9BYD5 112 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 JPT2Q9H910 190 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 TMEM242Q9NWH2 141 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 MSRB1Q9NZV6 116 aa8.68□□□□□ -1.02
SDC1-206ENST00000482879 TRAV4A0A0B4J268 109 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 A8MWV9 139 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 RS1O15537 224 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 RIGQ13278 110 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 Q6ZTC4 211 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 POM121L12Q8N7R1 296 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 C18orf15Q96N68 181 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 IMMP2LQ96T52 175 aa8.67□□□□□ -1.02
SDC1-206ENST00000482879 ATP6V1G1O75348 118 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 ATP5G1P05496 136 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 HTN3P15516 51 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 S100PP25815 95 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 CFAP126Q5VTH2 177 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 KCNIP4Q6PIL6 250 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 ZNF479Q96JC4 524 aa8.66□□□□□ -1.02
SDC1-206ENST00000482879 A0A087WWL8 130 aa8.65□□□□□ -1.02
SDC1-206ENST00000482879 IGHV3-73A0A0B4J1V6 119 aa8.65□□□□□ -1.02
SDC1-206ENST00000482879 TRGC1P0CF51 173 aa8.65□□□□□ -1.02
SDC1-206ENST00000482879 MRPL54Q6P161 138 aaKnown RBP8.65□□□□□ -1.02
SDC1-206ENST00000482879 C14orf178Q8N769 122 aaPredicted RBP8.65□□□□□ -1.02
SDC1-206ENST00000482879 AP1S3Q96PC3 154 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms