RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 RNASE3P12724 160 aaKnown RBP9.05□□□□□ -0.96
CHD3-209ENST00000473376 GNG5P63218 68 aa9.05□□□□□ -0.96
CHD3-209ENST00000473376 TOR2AQ5JU69 321 aa9.05□□□□□ -0.96
CHD3-209ENST00000473376 ATP6V0E2Q8NHE4 81 aa9.05□□□□□ -0.96
CHD3-209ENST00000473376 NKX6-2Q9C056 277 aaPredicted RBP9.05□□□□□ -0.96
CHD3-209ENST00000473376 COX11Q9Y6N1 276 aa9.05□□□□□ -0.96
CHD3-209ENST00000473376 TRAV8-3A0A0A6YYJ7 113 aa9.04□□□□□ -0.96
CHD3-209ENST00000473376 FUSP35637 526 aaKnown RBP eCLIP9.04□□□□□ -0.96
CHD3-209ENST00000473376 ZNF80P51504 273 aaPredicted RBP9.04□□□□□ -0.96
CHD3-209ENST00000473376 FGF8P55075 233 aaPredicted RBP9.04□□□□□ -0.96
CHD3-209ENST00000473376 SUMO1P63165 101 aaKnown RBP9.04□□□□□ -0.96
CHD3-209ENST00000473376 ZNF506Q5JVG8 444 aa9.04□□□□□ -0.96
CHD3-209ENST00000473376 DNLZQ5SXM8 178 aa9.04□□□□□ -0.96
CHD3-209ENST00000473376 DPPA3Q6W0C5 159 aa9.04□□□□□ -0.96
CHD3-209ENST00000473376 ACTR3CQ9C0K3 210 aaPredicted RBP9.04□□□□□ -0.96
CHD3-209ENST00000473376 C11orf21Q9P2W6 132 aa9.04□□□□□ -0.96
CHD3-209ENST00000473376 PGPEP1LA6NFU8 196 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 GGTLC3B5MD39 225 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 HMGB3O15347 200 aaKnown RBP9.03□□□□□ -0.96
CHD3-209ENST00000473376 SEC11BP0C7V7 166 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 LINC00694P0DN24 101 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 ATP6V0CP27449 155 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 COX8CQ7Z4L0 72 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 IL36BQ9NZH7 164 aa9.03□□□□□ -0.96
CHD3-209ENST00000473376 FABP5P3A8MUU1 101 aa9.02□□□□□ -0.97
CHD3-209ENST00000473376 EIF3GO75821 320 aaKnown RBP eCLIP9.02□□□□□ -0.97
CHD3-209ENST00000473376 Q6ZSN1 163 aa9.02□□□□□ -0.97
CHD3-209ENST00000473376 HSD17B11Q8NBQ5 300 aa9.02□□□□□ -0.97
CHD3-209ENST00000473376 LINC00479Q96M42 142 aa9.02□□□□□ -0.97
CHD3-209ENST00000473376 PARLQ9H300 379 aa9.02□□□□□ -0.97
CHD3-209ENST00000473376 SRRM2Q9UQ35 2752 aaKnown RBP9.01□□□□□ -0.97
CHD3-209ENST00000473376 RHODO00212 210 aa9.01□□□□□ -0.97
CHD3-209ENST00000473376 Q6ZSA8 131 aa9.01□□□□□ -0.97
CHD3-209ENST00000473376 HIST1H2BAQ96A08 127 aa9.01□□□□□ -0.97
CHD3-209ENST00000473376 SGK494Q96LW2 274 aa9.01□□□□□ -0.97
CHD3-209ENST00000473376 IGKV3D-20A0A0C4DH25 116 aa9□□□□□ -0.97
CHD3-209ENST00000473376 PTTG1O95997 202 aa9□□□□□ -0.97
CHD3-209ENST00000473376 S100A4P26447 101 aaKnown RBP9□□□□□ -0.97
CHD3-209ENST00000473376 ASIPP42127 132 aa9□□□□□ -0.97
CHD3-209ENST00000473376 UFSP1Q6NVU6 142 aa9□□□□□ -0.97
CHD3-209ENST00000473376 PRNTQ86SH4 94 aa9□□□□□ -0.97
CHD3-209ENST00000473376 TCEAL7Q9BRU2 100 aa9□□□□□ -0.97
CHD3-209ENST00000473376 CHCHD7Q9BUK0 85 aa9□□□□□ -0.97
CHD3-209ENST00000473376 ZFP30Q9Y2G7 519 aa9□□□□□ -0.97
CHD3-209ENST00000473376 BORCS7-ASMTA0A0B4J1R7 106 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 IGHV3-30P01768 117 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 IGHV3-33P01772 117 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 IGHV3-30-3P0DP02 117 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 IGHV3-30-5P0DP03 117 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 SYT8Q8NBV8 401 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 INO80EQ8NBZ0 244 aaPredicted RBP8.99□□□□□ -0.97
CHD3-209ENST00000473376 RMI2Q96E14 147 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 Q9HAA7 133 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 ALG5Q9Y673 324 aa8.99□□□□□ -0.97
CHD3-209ENST00000473376 HERC1Q15751 4861 aa8.98□□□□□ -0.97
CHD3-209ENST00000473376 CTXND1A0A1B0GTU2 59 aa8.98□□□□□ -0.97
CHD3-209ENST00000473376 SMR3BP02814 79 aaPredicted RBP8.98□□□□□ -0.97
CHD3-209ENST00000473376 GIPP09681 153 aaPredicted RBP8.98□□□□□ -0.97
CHD3-209ENST00000473376 MED28Q9H204 178 aa8.98□□□□□ -0.97
CHD3-209ENST00000473376 ARL2-SNX15V9GYD0 113 aa8.98□□□□□ -0.97
CHD3-209ENST00000473376 FAT1Q14517 4588 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 VPS13BQ7Z7G8 4022 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 IGHV3-73A0A0B4J1V6 119 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 TRBV10-1A0A0K0K1A3 114 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 TRBV6-1A0A0K0K1D8 114 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 PLA2G1BP04054 148 aaKnown RBP8.97□□□□□ -0.97
CHD3-209ENST00000473376 LGALSLQ3ZCW2 172 aaPredicted RBP8.97□□□□□ -0.97
CHD3-209ENST00000473376 BATF3Q9NR55 127 aa8.97□□□□□ -0.97
CHD3-209ENST00000473376 B4DEV8 164 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 PEX7O00628 323 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 IFNA7P01567 189 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 FHITP49789 147 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 ELOBQ15370 118 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 Q8N976 141 aa8.96□□□□□ -0.98
CHD3-209ENST00000473376 GAGE12JA6NER3 117 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 FAM74A7A6NL05 159 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 KRBOX1C9JBD0 128 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 GAGE1Q13065 139 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 GAGE4Q13068 117 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 GAGE5Q13069 117 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 GAGE13Q4V321 117 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 DMRTA1Q5VZB9 504 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 ATRAIDQ6UW56 229 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 Q86TA4 180 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 OR11H4Q8NGC9 324 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 SFRP2Q96HF1 295 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 FMC1Q96HJ9 113 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 FAM30AQ9NZY2 134 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 URGCP-MRPS24S4R325 110 aa8.95□□□□□ -0.98
CHD3-209ENST00000473376 RNF222A6NCQ9 220 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 ZNF726P1Q15940 193 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 ZNF674Q2M3X9 581 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 LINC01559Q495D7 138 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 FAM162BQ5T6X4 162 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 RPL7L1Q6DKI1 246 aaKnown RBP8.94□□□□□ -0.98
CHD3-209ENST00000473376 NIT1Q86X76 327 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 OR2T35Q8NGX2 323 aa8.94□□□□□ -0.98
CHD3-209ENST00000473376 FLG2Q5D862 2391 aaPredicted RBP8.93□□□□□ -0.98
CHD3-209ENST00000473376 TRAV34A0A0B4J273 112 aa8.93□□□□□ -0.98
CHD3-209ENST00000473376 ARMS2P0C7Q2 107 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 1323.3 ms