RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 RNF114Q9Y508 228 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 H7C423 109 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 NFE4Q86UQ8 179 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 CD177Q8N6Q3 437 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 LAMB1P07942 1786 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 A0A087WVE0 104 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 ZNF22P17026 224 aaPredicted RBP6.98□□□□□ -1.29
COL6A3-210ENST00000473258 NRACQ8N912 160 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 LRP5O75197 1615 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 CD59P13987 128 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 ZNF491Q8N8L2 437 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 PRSS22Q9GZN4 317 aa6.98□□□□□ -1.29
COL6A3-210ENST00000473258 NWD2Q9ULI1 1742 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 H0Y9J4 135 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 SSC5DA1L4H1 1573 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.97□□□□□ -1.29
COL6A3-210ENST00000473258 KIDINS220Q9ULH0 1771 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 DEFB121Q5J5C9 76 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 C1orf53Q5VUE5 145 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 ANKRD36CQ5JPF3 1778 aa6.97□□□□□ -1.29
COL6A3-210ENST00000473258 RGPD1P0DJD0 1748 aa6.96□□□□□ -1.29
COL6A3-210ENST00000473258 DIAPH2-AS1Q14236 149 aa6.96□□□□□ -1.29
COL6A3-210ENST00000473258 ABCA4P78363 2273 aa6.96□□□□□ -1.29
COL6A3-210ENST00000473258 FAM222AQ5U5X8 452 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 USMG5Q96IX5 58 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 TRBV7-7A0A0K0K1E9 115 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 FAM223AQ8IWN6 122 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 Q8N6K4 173 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 FMN2Q9NZ56 1722 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 CACNA1EQ15878 2313 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 PSME4Q14997 1843 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 WT1-ASQ06250 92 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 C4orf48Q5BLP8 95 aa6.96□□□□□ -1.3
COL6A3-210ENST00000473258 TFF2Q03403 129 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 TOPAZ1Q8N9V7 1692 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 ALS2Q96Q42 1657 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV7-4-1A0A0J9YVY3 117 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 BUB1B-PAK6H3BSN5 160 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 RFPL3SP0C7P2 107 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 CACNA1BQ00975 2339 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 CFHR3Q02985 330 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 ARTNQ5T4W7 220 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 APRG1Q8IVJ8 170 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 C17orf77Q96MU5 243 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV3-30P01768 117 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV3-30-5P0DP03 117 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV1-2P23083 117 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 AJUBAQ96IF1 538 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 DDX60Q8IY21 1712 aaKnown RBP6.95□□□□□ -1.3
COL6A3-210ENST00000473258 FAM223BA6NKX1 122 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 GNRH2O43555 120 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 DEFB130BP0DP73 79 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 DEFB130AP0DP74 79 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 GDF5OSQ5U4N7 250 aa6.95□□□□□ -1.3
COL6A3-210ENST00000473258 SLPIP03973 132 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 SAA4P35542 130 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 LIMD2Q9BT23 127 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 ROS1P08922 2347 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 C19orf71A6NCJ1 209 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 KIAA1217Q5T5P2 1943 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 IGHV1-18A0A0C4DH31 117 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 SDK2Q58EX2 2172 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 IGLV3-32A0A0A0MS00 114 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 TRBV10-1A0A0K0K1A3 114 aa6.94□□□□□ -1.3
COL6A3-210ENST00000473258 ANGP03950 147 aaKnown RBP6.94□□□□□ -1.3
COL6A3-210ENST00000473258 ARHGAP32A7KAX9 2087 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 GP9P14770 177 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 COX7BP24311 80 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 DEFB131AP59861 70 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 NEXN-AS1Q8NBZ9 246 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 ESM1Q9NQ30 184 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 PLCH1Q4KWH8 1693 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 C1orf158Q8N1D5 194 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 COL16A1Q07092 1604 aaPredicted RBP6.93□□□□□ -1.3
COL6A3-210ENST00000473258 OVOL3O00110 214 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 CRYGDP07320 174 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 MYCNOSP40205 109 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 IGF2-ASQ6U949 168 aa6.93□□□□□ -1.3
COL6A3-210ENST00000473258 PTPRQQ9UMZ3 2332 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 MCM3APO60318 1980 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 RREB1Q92766 1687 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 C20orf203Q8NBC4 194 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 LINC00308Q8TCZ7 52 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 RMI2Q96E14 147 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 FREM1Q5H8C1 2179 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 YLPM1P49750 1951 aaKnown RBP6.92□□□□□ -1.3
COL6A3-210ENST00000473258 WT1P19544 449 aaPredicted RBP6.92□□□□□ -1.3
COL6A3-210ENST00000473258 MDFIQ99750 246 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 MINOS1Q5TGZ0 78 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 WFDC10BQ8IUB3 73 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 MINOS1-NBL1R4GNA1 71 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 ANKRD36A6QL64 1941 aa6.92□□□□□ -1.3
COL6A3-210ENST00000473258 C9orf47Q6ZRZ4 202 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 TMEM254Q8TBM7 123 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 FAM167A-AS1Q96KT0 104 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 COL6A6A6NMZ7 2263 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 CRYBG1Q9Y4K1 1723 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 IGKV1D-17A0A075B6S4 117 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 NDUFA4O00483 81 aa6.91□□□□□ -1.3
COL6A3-210ENST00000473258 FHL1Q13642 323 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms