RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TRBV6-1A0A0K0K1D8 114 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 DKK1O94907 266 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRB3Q04118 309 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-209ENST00000472056 CD24P25063 80 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRR20EP86478 221 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRR20CP86479 221 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRR20DP86480 221 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRR20BP86481 221 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 PRR20AP86496 221 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 MDS2Q8NDY4 140 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 MSRB2Q9Y3D2 182 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 TIMM17AQ99595 171 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 U3KQE9 123 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 IGKV1-6A0A0C4DH72 117 aa10.57□□□□□ -0.72
COL6A3-209ENST00000472056 E9PLD3 99 aa10.56□□□□□ -0.72
COL6A3-209ENST00000472056 DUX4L9Q6RFH8 374 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-209ENST00000472056 NDUFV3P56181 108 aaKnown RBP10.56□□□□□ -0.72
COL6A3-209ENST00000472056 AMTNQ6UX39 209 aa10.56□□□□□ -0.72
COL6A3-209ENST00000472056 DKK2Q9UBU2 259 aa10.56□□□□□ -0.72
COL6A3-209ENST00000472056 LINC01619G3V211 115 aa10.56□□□□□ -0.72
COL6A3-209ENST00000472056 CLPSP04118 112 aa10.56□□□□□ -0.72
COL6A3-209ENST00000472056 RAI1Q7Z5J4 1906 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-209ENST00000472056 FAM240AA0A1B0GVK7 77 aa10.55□□□□□ -0.72
COL6A3-209ENST00000472056 SPTSSBQ8NFR3 76 aa10.55□□□□□ -0.72
COL6A3-209ENST00000472056 C1orf147Q96MC9 270 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-209ENST00000472056 IGHV1-58A0A0C4DH39 117 aa10.55□□□□□ -0.72
COL6A3-209ENST00000472056 NREPQ16612 68 aa10.55□□□□□ -0.72
COL6A3-209ENST00000472056 Q9H8V8 135 aa10.55□□□□□ -0.72
COL6A3-209ENST00000472056 RSPO4Q2I0M5 234 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-209ENST00000472056 C11orf86A6NJI1 115 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 LGALS9O00182 355 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 RPL35AP18077 110 aaKnown RBP10.54□□□□□ -0.72
COL6A3-209ENST00000472056 IGLV3-1P01715 115 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 B3GALT5-AS1P59052 145 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 TMEM219Q86XT9 240 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 DYNAPQ8N1N2 210 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 IGHV7-4-1A0A0J9YVY3 117 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 IGHV1-69P01742 117 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 CTRLP40313 264 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 K7EN84 100 aa10.54□□□□□ -0.72
COL6A3-209ENST00000472056 CGB7P0DN87 165 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 SPINK13Q1W4C9 94 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 CRYGCP07315 174 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 ATP1A1-AS1Q5TC04 95 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 PCP2Q8IVA1 136 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 Q8N1Y9 231 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 WFDC12Q8WWY7 111 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 TTC28Q96AY4 2481 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 OVOL3O00110 214 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 TOMM6Q96B49 74 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 IGHV3-53P01767 116 aa10.53□□□□□ -0.72
COL6A3-209ENST00000472056 COL4A5P29400 1685 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 C15orf65H3BRN8 121 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 SND1-IT1Q9HBX3 110 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 LYRM9A8MSI8 78 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 CGB3P0DN86 165 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 LINC00527Q9UJ94 153 aa10.52□□□□□ -0.72
COL6A3-209ENST00000472056 A4D1N5 150 aa10.52□□□□□ -0.73
COL6A3-209ENST00000472056 FHL1Q13642 323 aa10.52□□□□□ -0.73
COL6A3-209ENST00000472056 WT1-ASQ06250 92 aa10.52□□□□□ -0.73
COL6A3-209ENST00000472056 NSUN5P1Q3KNT7 163 aa10.52□□□□□ -0.73
COL6A3-209ENST00000472056 ELANEP08246 267 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 DEFB131AP59861 70 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 ZNRF2Q8NHG8 242 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 MRPL36Q9P0J6 103 aaKnown RBP10.51□□□□□ -0.73
COL6A3-209ENST00000472056 ATP6V0E1O15342 81 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 ANXA2RQ3ZCQ2 193 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 NDUFC2-KCTD14E9PQ53 114 aa10.51□□□□□ -0.73
COL6A3-209ENST00000472056 THSD7BQ9C0I4 1608 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 DEFB130BP0DP73 79 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 DEFB130AP0DP74 79 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 Q6ZUT4 128 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 C10orf105Q8TEF2 133 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 F5H768 121 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 C17orf58Q2M2W7 97 aa10.5□□□□□ -0.73
COL6A3-209ENST00000472056 ANGP03950 147 aaKnown RBP10.49□□□□□ -0.73
COL6A3-209ENST00000472056 CRYGBP07316 175 aa10.49□□□□□ -0.73
COL6A3-209ENST00000472056 A0A0G2JNJ9 132 aa10.49□□□□□ -0.73
COL6A3-209ENST00000472056 Q9UFV3 132 aa10.49□□□□□ -0.73
COL6A3-209ENST00000472056 C20orf173Q96LM9 149 aa10.49□□□□□ -0.73
COL6A3-209ENST00000472056 MSMBP08118 114 aa10.49□□□□□ -0.73
COL6A3-209ENST00000472056 C4orf48Q5BLP8 95 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 ZNF491Q8N8L2 437 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 ETDCA0A1B0GVM5 59 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 TRAV26-2A0A0B4J265 109 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 DEFB105AQ8NG35 78 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 COX7B2Q8TF08 81 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 Q6ZS92 163 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 C16orf74Q96GX8 76 aa10.48□□□□□ -0.73
COL6A3-209ENST00000472056 RNASE8Q8TDE3 154 aaKnown RBP10.48□□□□□ -0.73
COL6A3-209ENST00000472056 TRBV7-3A0A075B6L6 115 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 MRPS36P82909 103 aaKnown RBP10.47□□□□□ -0.73
COL6A3-209ENST00000472056 UBE2AP49459 152 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 FAM120AOSQ5T036 256 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 TRAV12-2A0A075B6T6 113 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 IGLV1-44P01699 117 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 F8P00451 2351 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 TRAV26-1A0A087WT03 109 aa10.47□□□□□ -0.73
COL6A3-209ENST00000472056 PRB4P10163 310 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-209ENST00000472056 IGF2BP2-AS1Q96M15 143 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms