RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TRAV12-2A0A075B6T6 113 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 A0A096LNT2 108 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 MGPP08493 103 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 GTSCR1Q86UQ5 136 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 BOD1L2Q8IYS8 172 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 FAM19A4Q96LR4 140 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 TMEM160Q9NX00 188 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 ACANP16112 2415 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 WNK1Q9H4A3 2382 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 UBE2V1Q13404 147 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 LAGE3Q14657 143 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 RASL10AQ92737 203 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 BEX4Q9NWD9 120 aaPredicted RBP14.33□□□□□ -0.12
VIM-203ENST00000469543 NOTCH3Q9UM47 2321 aa14.33□□□□□ -0.12
VIM-203ENST00000469543 TRAV12-3A0A0B4J271 114 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 TMEM8BA6NDV4 472 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 K7EP13 123 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 LINC01356Q8N9X3 169 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 DPF1Q92782 380 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 TENM4Q6N022 2769 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 ASIPP42127 132 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 LENEPQ9Y5L5 61 aa14.32□□□□□ -0.12
VIM-203ENST00000469543 SYNJ2BPP57105 145 aa14.31□□□□□ -0.12
VIM-203ENST00000469543 TMEM97Q5BJF2 176 aa14.31□□□□□ -0.12
VIM-203ENST00000469543 MRPL35Q9NZE8 188 aaKnown RBP14.31□□□□□ -0.12
VIM-203ENST00000469543 BRI3O95415 125 aa14.31□□□□□ -0.12
VIM-203ENST00000469543 PSMG4Q5JS54 123 aa14.31□□□□□ -0.12
VIM-203ENST00000469543 AMMECR1LQ6DCA0 310 aa14.31□□□□□ -0.12
VIM-203ENST00000469543 K7EMI3 77 aa14.3□□□□□ -0.12
VIM-203ENST00000469543 FLNAP21333 2647 aaKnown RBP14.3□□□□□ -0.12
VIM-203ENST00000469543 TRAV8-6A0A0B4J262 113 aa14.29□□□□□ -0.12
VIM-203ENST00000469543 ZC2HC1BQ5TFG8 222 aa14.29□□□□□ -0.12
VIM-203ENST00000469543 C18orf65Q6ZTR6 163 aa14.29□□□□□ -0.12
VIM-203ENST00000469543 MTORP42345 2549 aa14.29□□□□□ -0.12
VIM-203ENST00000469543 A0A087WWL8 130 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 DEFB136Q30KP8 78 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 ADAMTSL5Q6ZMM2 481 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 OR1N2Q8NGR9 330 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 ZMAT4Q9H898 229 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 IGKCP01834 107 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 SUMO2P61956 95 aaKnown RBP14.28□□□□□ -0.12
VIM-203ENST00000469543 SMIM2Q9BVW6 85 aa14.28□□□□□ -0.12
VIM-203ENST00000469543 MYOZ3Q8TDC0 251 aa14.27□□□□□ -0.12
VIM-203ENST00000469543 HOXA3O43365 443 aaPredicted RBP14.27□□□□□ -0.13
VIM-203ENST00000469543 CD7P09564 240 aa14.27□□□□□ -0.13
VIM-203ENST00000469543 RAB37Q96AX2 223 aa14.27□□□□□ -0.13
VIM-203ENST00000469543 IGHV4OR15-8A0A075B7B6 117 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 A0A087WW49 117 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 SLC25A16P16260 332 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 DUX3Q96PT4 197 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 DPH3P1Q9H4G8 78 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 GATA3P23771 443 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 FAM159AQ6UWV7 190 aa14.26□□□□□ -0.13
VIM-203ENST00000469543 CR1P17927 2039 aa14.25□□□□□ -0.13
VIM-203ENST00000469543 KLLNB2CW77 178 aa14.25□□□□□ -0.13
VIM-203ENST00000469543 COX6B1P14854 86 aa14.25□□□□□ -0.13
VIM-203ENST00000469543 MDFICQ9P1T7 246 aa14.25□□□□□ -0.13
VIM-203ENST00000469543 ITPR2Q14571 2701 aa14.25□□□□□ -0.13
VIM-203ENST00000469543 RNASE8Q8TDE3 154 aaKnown RBP14.25□□□□□ -0.13
VIM-203ENST00000469543 PRSS47A8MTI9 375 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 K7EMT4 169 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 DSCR9P59020 149 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 APRG1Q8IVJ8 170 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 MAPKAPK5-AS1Q8N8E1 139 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 OR4C5Q8NGB2 326 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 MRAP2Q96G30 205 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 PRM2P04554 102 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 SPINK13Q1W4C9 94 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 FAM74A4Q5TZK3 123 aa14.24□□□□□ -0.13
VIM-203ENST00000469543 DPM2O94777 84 aa14.23□□□□□ -0.13
VIM-203ENST00000469543 LINC00315P59091 139 aa14.23□□□□□ -0.13
VIM-203ENST00000469543 JMJD1CQ15652 2540 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 ID1P41134 155 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 ZNF843Q8N446 348 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 CSTL1Q9H114 145 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 VPREB3Q9UKI3 123 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 HTN1P15515 57 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 HOXD3P31249 432 aaPredicted RBP14.22□□□□□ -0.13
VIM-203ENST00000469543 C21orf62-AS1Q17RA5 79 aa14.22□□□□□ -0.13
VIM-203ENST00000469543 F5H697 171 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.21□□□□□ -0.13
VIM-203ENST00000469543 ATP5LO75964 103 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 IGHV4-31P0DP07 118 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 SCGB3A1Q96QR1 104 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 ZNF702PQ9H963 129 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 KIF25-AS1Q9Y6Z4 181 aa14.21□□□□□ -0.13
VIM-203ENST00000469543 AP1S3Q96PC3 154 aa14.2□□□□□ -0.14
VIM-203ENST00000469543 ZNF580Q9UK33 172 aa14.2□□□□□ -0.14
VIM-203ENST00000469543 TRBV25-1A0A075B6N4 114 aa14.2□□□□□ -0.14
VIM-203ENST00000469543 A0A087WX48 190 aa14.2□□□□□ -0.14
VIM-203ENST00000469543 EMP1P54849 157 aa14.2□□□□□ -0.14
VIM-203ENST00000469543 H3BUT2 72 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 GCSHP23434 173 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 SLURP1P55000 103 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 C2orf66Q6UXQ4 117 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 Q6YL49 198 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 Q8N1Y9 231 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 JMJD8Q96S16 334 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 FXYD2P54710 66 aa14.19□□□□□ -0.14
VIM-203ENST00000469543 OR9G4Q8NGQ1 327 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms