RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 LRCOL1A6NCL2 159 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 IGHV3-30P01768 117 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 IGHV3-33P01772 117 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 IGHV3-30-3P0DP02 117 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 IGHV3-30-5P0DP03 117 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 PTH2Q96A98 100 aa12.84□□□□□ -0.35
COL9A3-206ENST00000466532 ACTR3CQ9C0K3 210 aaPredicted RBP12.84□□□□□ -0.35
COL9A3-206ENST00000466532 MGST1P10620 155 aaKnown RBP12.83□□□□□ -0.36
COL9A3-206ENST00000466532 RNASE3P12724 160 aaKnown RBP12.83□□□□□ -0.36
COL9A3-206ENST00000466532 SAPCD1Q5SSQ6 148 aa12.83□□□□□ -0.36
COL9A3-206ENST00000466532 LELP1Q5T871 98 aa12.83□□□□□ -0.36
COL9A3-206ENST00000466532 GTSF1LQ9H1H1 148 aa12.83□□□□□ -0.36
COL9A3-206ENST00000466532 MED28Q9H204 178 aa12.83□□□□□ -0.36
COL9A3-206ENST00000466532 TNFSF18Q9UNG2 199 aa12.83□□□□□ -0.36
COL9A3-206ENST00000466532 HERC1Q15751 4861 aa12.82□□□□□ -0.36
COL9A3-206ENST00000466532 ATP6V0E2Q8NHE4 81 aa12.82□□□□□ -0.36
COL9A3-206ENST00000466532 NTN5Q8WTR8 489 aaPredicted RBP12.82□□□□□ -0.36
COL9A3-206ENST00000466532 SMR3BP02814 79 aaPredicted RBP12.81□□□□□ -0.36
COL9A3-206ENST00000466532 TRAV34A0A0B4J273 112 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 A0A1W2PRE2 83 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 S100A4P26447 101 aaKnown RBP12.8□□□□□ -0.36
COL9A3-206ENST00000466532 HAMPP81172 84 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 Q5BKY6 102 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 Q8N814 137 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 LINC00479Q96M42 142 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 DNAH8Q96JB1 4490 aa12.8□□□□□ -0.36
COL9A3-206ENST00000466532 IGKV3D-20A0A0C4DH25 116 aa12.79□□□□□ -0.36
COL9A3-206ENST00000466532 PTTG1O95997 202 aa12.79□□□□□ -0.36
COL9A3-206ENST00000466532 RPL7L1Q6DKI1 246 aaKnown RBP12.79□□□□□ -0.36
COL9A3-206ENST00000466532 Q6ZSN1 163 aa12.79□□□□□ -0.36
COL9A3-206ENST00000466532 PARLQ9H300 379 aa12.79□□□□□ -0.36
COL9A3-206ENST00000466532 ARL2-SNX15V9GYD0 113 aa12.79□□□□□ -0.36
COL9A3-206ENST00000466532 A8MWV9 139 aa12.78□□□□□ -0.36
COL9A3-206ENST00000466532 IFNA7P01567 189 aa12.78□□□□□ -0.36
COL9A3-206ENST00000466532 LAGE3Q14657 143 aa12.78□□□□□ -0.36
COL9A3-206ENST00000466532 LGALSLQ3ZCW2 172 aaPredicted RBP12.78□□□□□ -0.36
COL9A3-206ENST00000466532 ZFP2Q6ZN57 461 aa12.78□□□□□ -0.36
COL9A3-206ENST00000466532 INO80EQ8NBZ0 244 aaPredicted RBP12.78□□□□□ -0.36
COL9A3-206ENST00000466532 TMEM70Q9BUB7 260 aa12.78□□□□□ -0.36
COL9A3-206ENST00000466532 BORCS7-ASMTA0A0B4J1R7 106 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GAGE12JA6NER3 117 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 FABP5P3A8MUU1 101 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GIPP09681 153 aaPredicted RBP12.77□□□□□ -0.37
COL9A3-206ENST00000466532 ASIPP42127 132 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 UBE2G2P60604 165 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GAGE1Q13065 139 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GAGE4Q13068 117 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GAGE5Q13069 117 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 ZNF726P1Q15940 193 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 GAGE13Q4V321 117 aa12.77□□□□□ -0.37
COL9A3-206ENST00000466532 CTXND1A0A1B0GTU2 59 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 RNF222A6NCQ9 220 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 PEX7O00628 323 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 PIK3CD-AS1Q5SR53 167 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 Q86TA4 180 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 Q8N3U1 123 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 OR2T35Q8NGX2 323 aa12.76□□□□□ -0.37
COL9A3-206ENST00000466532 FXYD6-FXYD2A0A087WZ82 144 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 FAM229AH3BQW9 127 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 LINC00694P0DN24 101 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 TM2D2Q9BX73 214 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 JPT2Q9H910 190 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 IL36BQ9NZH7 164 aa12.75□□□□□ -0.37
COL9A3-206ENST00000466532 SRRM2Q9UQ35 2752 aaKnown RBP12.74□□□□□ -0.37
COL9A3-206ENST00000466532 B4DEV8 164 aa12.74□□□□□ -0.37
COL9A3-206ENST00000466532 H3BVH4 76 aa12.74□□□□□ -0.37
COL9A3-206ENST00000466532 FGF8P55075 233 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-206ENST00000466532 SAMD10Q9BYL1 202 aa12.74□□□□□ -0.37
COL9A3-206ENST00000466532 BATF3Q9NR55 127 aa12.74□□□□□ -0.37
COL9A3-206ENST00000466532 DMBT1Q9UGM3 2413 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-206ENST00000466532 FAM74A7A6NL05 159 aa12.73□□□□□ -0.37
COL9A3-206ENST00000466532 UFSP1Q6NVU6 142 aa12.73□□□□□ -0.37
COL9A3-206ENST00000466532 C14orf178Q8N769 122 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-206ENST00000466532 HIST1H2BAQ96A08 127 aa12.73□□□□□ -0.37
COL9A3-206ENST00000466532 NKX6-2Q9C056 277 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-206ENST00000466532 Q9UF83 564 aa12.73□□□□□ -0.37
COL9A3-206ENST00000466532 TRAV8-3A0A0A6YYJ7 113 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 M0R036 132 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 WFDC2Q14508 124 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 AKR1C8PQ5T2L2 129 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 DMRTA1Q5VZB9 504 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 SYT8Q8NBV8 401 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 ZC2HC1AQ96GY0 325 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 MYCBP2O75592 4640 aa12.72□□□□□ -0.37
COL9A3-206ENST00000466532 A0A087WWC5 75 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 KRBOX1C9JBD0 128 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 ARMS2P0C7Q2 107 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 CRIP1P50238 77 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 DNLZQ5SXM8 178 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 DAZ4Q86SG3 579 aaKnown RBP12.71□□□□□ -0.37
COL9A3-206ENST00000466532 DAZ3Q9NR90 486 aaKnown RBP12.71□□□□□ -0.37
COL9A3-206ENST00000466532 FAM30AQ9NZY2 134 aa12.71□□□□□ -0.37
COL9A3-206ENST00000466532 FLG2Q5D862 2391 aaPredicted RBP12.7□□□□□ -0.38
COL9A3-206ENST00000466532 GRIFINA4D1Z8 144 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 RHODO00212 210 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 TOR2AQ5JU69 321 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 FAM74A4Q5TZK3 123 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 OR11H4Q8NGC9 324 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 ZFP30Q9Y2G7 519 aa12.7□□□□□ -0.38
COL9A3-206ENST00000466532 LECT2O14960 151 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms