RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	GCSH	P23434	173 aa		6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	TRAV41	A0A0B4J266	112 aa		6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	HBD	P02042	147 aa		6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	ETDB	Q3ZM63	59 aa		6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	CLEC19A	Q6UXS0	136 aa		6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	PHLDA1	Q8WV24	401 aa	Predicted RBP	6.6	□□□□□ -1.35
SYNE1-215	ENST00000460912	IGHV4-38-2	P0DP08	117 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	CSN1S1	P47710	185 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912		Q8N8P6	123 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	KLLN	B2CW77	178 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	TNFRSF6B	O95407	300 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	EVI2A	P22794	236 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	GATA3	P23771	443 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	SLC25A34	Q6PIV7	304 aa		6.59	□□□□□ -1.35
SYNE1-215	ENST00000460912	TEX48	A0A1B0GUV7	120 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912		J3QLI3	93 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	NMU	P48645	174 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	TRAV8-6	A0A0B4J262	113 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	CD5L	O43866	347 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	SPINK8	P0C7L1	97 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	ZNF418	Q8TF45	676 aa	Predicted RBP	6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	DCANP1	Q8TF63	244 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	PEF1	Q9UBV8	284 aa	Known RBP	6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	IGKV2D-26	A0A0A0MRZ7	120 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	MSMB	P08118	114 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	RNASE3	P12724	160 aa	Known RBP	6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	GATA1	P15976	413 aa	Predicted RBP	6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	OR2K2	Q8NGT1	345 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	NOTCH2	Q04721	2471 aa		6.58	□□□□□ -1.36
SYNE1-215	ENST00000460912	IGHV3OR16-8	A0A075B7F1	116 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912		A0A1B0GWB2	263 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912		A8MTW9	85 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	PSMB8	P28062	276 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	RPL32	P62910	135 aa	Known RBP	6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	HSD52	Q0P140	79 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	TMEM95	Q3KNT9	176 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	SH2D6	Q7Z4S9	175 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	YAE1D1	Q9NRH1	226 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	HIGD1B	Q9P298	99 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	DKK2	Q9UBU2	259 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	ECSCR	Q19T08	205 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	LINC01356	Q8N9X3	169 aa		6.57	□□□□□ -1.36
SYNE1-215	ENST00000460912	LRRK2	Q5S007	2527 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	CYSRT1	A8MQ03	144 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	FABP2	P12104	132 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	EDN2	P20800	178 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	TMEM219	Q86XT9	240 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	RASL10A	Q92737	203 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	IFI27L1	Q96BM0	104 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	RNF183	Q96D59	192 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	USMG5	Q96IX5	58 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	KLK15	Q9H2R5	256 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	NXT2	Q9NPJ8	142 aa	Known RBP	6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	SPG11	Q96JI7	2443 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912		K7EMT4	169 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	TWIST1	Q15672	202 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	TTC32	Q5I0X7	151 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	WFDC11	Q8NEX6	87 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	JMJD8	Q96S16	334 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	LINC01619	G3V211	115 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	C18orf15	Q96N68	181 aa		6.56	□□□□□ -1.36
SYNE1-215	ENST00000460912	SORL1	Q92673	2214 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	IGHV3-35	A0A0C4DH35	117 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	GAGE12H	A6NDE8	117 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	CACNG7	P62955	275 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	AMTN	Q6UX39	209 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	FA2H	Q7L5A8	372 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	WFDC3	Q8IUB2	231 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	PRSS3P2	Q8NHM4	247 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	MRAP2	Q96G30	205 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	METTL26	Q96S19	204 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	TRAV12-1	A0A0B4J245	112 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	LOC107984156	A0A0G2JMH3	177 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912		B4DSR2	109 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912		M0R381	172 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	EMP1	P54849	157 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	ARL17A	Q8IVW1	177 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	LINC00477	Q96M19	166 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	IGHV4OR15-8	A0A075B7B6	117 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912		A0A087WW49	117 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912		M0QXV9	152 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	FXYD7	P58549	80 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912		Q8N2B8	174 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	ODF3	Q96PU9	254 aa		6.55	□□□□□ -1.36
SYNE1-215	ENST00000460912	IGHV3-66	A0A0C4DH42	116 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	TMEM89	A2RUT3	159 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	CKS2	P33552	79 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	OR8A1	Q8NGG7	326 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	OR9G4	Q8NGQ1	327 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	PCP2	Q8IVA1	136 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	TOMM6	Q96B49	74 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	LOC389332	A0A1B0GUA5	103 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	SEC11A	P67812	179 aa		6.54	□□□□□ -1.36
SYNE1-215	ENST00000460912	TSHB	P01222	138 aa		6.53	□□□□□ -1.36
SYNE1-215	ENST00000460912	CRYGD	P07320	174 aa		6.53	□□□□□ -1.36
SYNE1-215	ENST00000460912	BLCAP	P62952	87 aa		6.53	□□□□□ -1.36
SYNE1-215	ENST00000460912	PSMG4	Q5JS54	123 aa		6.53	□□□□□ -1.36
SYNE1-215	ENST00000460912	BRD3OS	Q6XYD6	125 aa		6.53	□□□□□ -1.36
SYNE1-215	ENST00000460912	NEXN-AS1	Q8NBZ9	246 aa		6.53	□□□□□ -1.36

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