RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 IGKV1-16P04430 117 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 MSMBP08118 114 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 NOTCH3Q9UM47 2321 aa4.87□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3OR16-13A0A075B7E8 117 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-74A0A0B4J1X5 117 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 BPESC1Q9GZL8 116 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 PLCE1Q9P212 2302 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 FAM236AA0A1B0GUQ0 79 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 FAM236BA0A1B0GV22 79 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 VWC2LB2RUY7 222 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 J3QLI3 93 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 P0C879 139 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 CLUHP3Q96NS8 147 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 UBL5Q9BZL1 73 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 TRBV7-1A0A0A6YYK4 115 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 RBAKDNA6NC62 111 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 MT-ATP8P03928 68 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 ODF1Q14990 250 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 ZNF876PQ49A33 203 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 DUX5Q96PT3 197 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 ANKHD1Q8IWZ3 2542 aaKnown RBP4.86□□□□□ -1.63
VPS13D-202ENST00000460333 INS-IGF2F8WCM5 200 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 UQCRQO14949 82 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 PLA2G2AP14555 144 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 ANXA2RQ3ZCQ2 193 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 GATD1Q8NB37 220 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 DUX3Q96PT4 197 aa4.86□□□□□ -1.63
VPS13D-202ENST00000460333 SPTBN5Q9NRC6 3674 aaKnown RBP4.86□□□□□ -1.63
VPS13D-202ENST00000460333 PRR14LQ5THK1 2151 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 IGHV3-49A0A0A0MS15 119 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 C19orf71A6NCJ1 209 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 PAX8Q06710 450 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 MORN5Q5VZ52 161 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 MRPL53Q96EL3 112 aaKnown RBP4.85□□□□□ -1.63
VPS13D-202ENST00000460333 FAM167A-AS1Q96KT0 104 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 YLPM1P49750 1951 aaKnown RBP4.85□□□□□ -1.63
VPS13D-202ENST00000460333 TRAV13-2A0A0B4J235 113 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 RHOHQ15669 191 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 UFSP1Q6NVU6 142 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 MBD6Q96DN6 1003 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 GP9P14770 177 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 TOMM7Q9P0U1 55 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 NDUFA12Q9UI09 145 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 A0A1W2PRX2 142 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 LINC00158P58513 81 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 NPC2P61916 151 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 ZNF415Q09FC8 603 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 NSUN5P1Q3KNT7 163 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 VMO1Q7Z5L0 202 aa4.85□□□□□ -1.63
VPS13D-202ENST00000460333 PHLDA1Q8WV24 401 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-202ENST00000460333 I3L3M4 83 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 FRMD6-AS1P0C7T7 363 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 RPL32P62910 135 aaKnown RBP4.84□□□□□ -1.63
VPS13D-202ENST00000460333 WT1-ASQ06250 92 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 LINC00643Q86TS7 51 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 C1orf43Q9BWL3 253 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 IGLV2-8P01709 118 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 Q6Q795 121 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 LENEPQ9Y5L5 61 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 LINC01619G3V211 115 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 LY6HO94772 140 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 PEMTQ9UBM1 199 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 LRRK2Q5S007 2527 aa4.84□□□□□ -1.63
VPS13D-202ENST00000460333 ADARB2-AS1A8MUL3 147 aa4.84□□□□□ -1.64
VPS13D-202ENST00000460333 ERCC8Q13216 396 aa4.84□□□□□ -1.64
VPS13D-202ENST00000460333 Q8N976 141 aa4.84□□□□□ -1.64
VPS13D-202ENST00000460333 ICOSQ9Y6W8 199 aa4.84□□□□□ -1.64
VPS13D-202ENST00000460333 DOCK11Q5JSL3 2073 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 ZFYVE26Q68DK2 2539 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 C2orf91Q6ZV80 131 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 PRIMA1Q86XR5 153 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 ZNF295-AS1Q8N0V1 137 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 MAPK1IP1LQ8NDC0 245 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 ZNRD1Q9P1U0 126 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 CHD3Q12873 2000 aaKnown RBP4.83□□□□□ -1.64
VPS13D-202ENST00000460333 TNFRSF13BO14836 293 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-202ENST00000460333 PROP1O75360 226 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 UBE2E1P51965 193 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 BRWD1-AS2P59051 145 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 C15orf32Q32M92 178 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 IMUPQ9GZP8 106 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 IGHV3OR16-8A0A075B7F1 116 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 FAM223BA6NKX1 122 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 KNCNA6PVL3 124 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 C11orf71Q6IPW1 123 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 FAM223AQ8IWN6 122 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 LRRC75A-AS1Q8N1F1 130 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 IGKV3D-20A0A0C4DH25 116 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 SDHAF1A6NFY7 115 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 SRRM4A7MD48 611 aaKnown RBP4.83□□□□□ -1.64
VPS13D-202ENST00000460333 PAX4O43316 350 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 EGR2P11161 476 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-202ENST00000460333 NDUFA11Q86Y39 141 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 C3orf22Q8N5N4 141 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 IGFBPL1Q8WX77 278 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 TOMM6Q96B49 74 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 FAM110AQ9BQ89 295 aa4.83□□□□□ -1.64
VPS13D-202ENST00000460333 TRAV13-1A0A0B4J241 112 aa4.82□□□□□ -1.64
VPS13D-202ENST00000460333 IGLV1-47P01700 117 aa4.82□□□□□ -1.64
VPS13D-202ENST00000460333 BAALC-AS2P0C853 105 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms