RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SCGB3A1Q96QR1 104 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 NAA38Q9BRA0 125 aaKnown RBP8.56□□□□□ -1.04
USP4-205ENST00000431357 TTTY13Q9BZ97 58 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 LINC00527Q9UJ94 153 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 WNK2Q9Y3S1 2297 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 IGHV4-39P01824 125 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 ANXA2RQ3ZCQ2 193 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 RASL10AQ92737 203 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 PIMREGQ9BSJ6 248 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 SPTA1P02549 2419 aa8.56□□□□□ -1.04
USP4-205ENST00000431357 LINC01549A6NIU2 74 aa8.55□□□□□ -1.04
USP4-205ENST00000431357 PHLDA1Q8WV24 401 aaPredicted RBP8.55□□□□□ -1.04
USP4-205ENST00000431357 IGHV3OR16-10A0A075B7F0 116 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 A6NDX4 124 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 TRBV12-3P01733 135 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 POM121L12Q8N7R1 296 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 MAPKAPK5-AS1Q8N8E1 139 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 NEXN-AS1Q8NBZ9 246 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 RNF183Q96D59 192 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 RNASE4P34096 147 aaKnown RBP8.54□□□□□ -1.04
USP4-205ENST00000431357 BRD3OSQ6XYD6 125 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 C14orf178Q8N769 122 aaPredicted RBP8.54□□□□□ -1.04
USP4-205ENST00000431357 SPAG8Q99932 426 aaPredicted RBP8.54□□□□□ -1.04
USP4-205ENST00000431357 NHP2Q9NX24 153 aaKnown RBP8.54□□□□□ -1.04
USP4-205ENST00000431357 CEP295Q9C0D2 2601 aa8.54□□□□□ -1.04
USP4-205ENST00000431357 NXPH4O95158 308 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 SPINK8P0C7L1 97 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 RPL11P62913 178 aaKnown RBP8.53□□□□□ -1.04
USP4-205ENST00000431357 ATP6V0E2Q8NHE4 81 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 ANAPC13Q9BS18 74 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 E9PLD3 99 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 C19orf84I3L1E1 186 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 MGPP08493 103 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 PF4V1P10720 104 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 C2orf66Q6UXQ4 117 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 RHPN1-AS1Q9BWJ2 59 aa8.53□□□□□ -1.04
USP4-205ENST00000431357 TACC2O95359 2948 aa8.52□□□□□ -1.04
USP4-205ENST00000431357 MYMXA0A1B0GTQ4 84 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 K7EMT4 169 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 RNASE3P12724 160 aaKnown RBP8.52□□□□□ -1.05
USP4-205ENST00000431357 ID1P41134 155 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 LY6EQ16553 131 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 RPL39LQ96EH5 51 aaKnown RBP8.52□□□□□ -1.05
USP4-205ENST00000431357 HIST1H4GQ99525 98 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 DAZ1Q9NQZ3 744 aaKnown RBP8.52□□□□□ -1.05
USP4-205ENST00000431357 LRBAP50851 2863 aa8.52□□□□□ -1.05
USP4-205ENST00000431357 HRNRQ86YZ3 2850 aaPredicted RBP8.52□□□□□ -1.05
USP4-205ENST00000431357 IGHV4OR15-8A0A075B7B6 117 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 A0A087WW49 117 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 IGHV4-61A0A0C4DH41 118 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 IGLL5B9A064 214 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 H3BUX3 64 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 WIPF1O43516 503 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 IGLV1-40P01703 118 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 IGHV3-11P01762 117 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 LY6DQ14210 128 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 C12orf74Q32Q52 190 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 SMIM20Q8N5G0 67 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 C10orf105Q8TEF2 133 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 BAALCQ8WXS3 180 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 DCHS2Q6V1P9 2916 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 TRBV7-3A0A075B6L6 115 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 RNF223E7ERA6 249 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 K7ERJ3 54 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 GNRH2O43555 120 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 C5orf47Q569G3 176 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 KLK15Q9H2R5 256 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 ZNF580Q9UK33 172 aa8.51□□□□□ -1.05
USP4-205ENST00000431357 DCHS1Q96JQ0 3298 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 A0A1B0GWB2 263 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 KLLNB2CW77 178 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 IGHV4-38-2P0DP08 117 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 PAPPA-AS1Q5QFB9 102 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 C1QTNF4Q9BXJ3 329 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 PRSS29PA6NIE9 313 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 F6UB75 175 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 FAM159AQ6UWV7 190 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 CITED1Q99966 193 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 PRORYQ9H606 182 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 KIF25-AS1Q9Y6Z4 181 aa8.5□□□□□ -1.05
USP4-205ENST00000431357 B5MCH6 92 aa8.49□□□□□ -1.05
USP4-205ENST00000431357 DEFB1P60022 68 aa8.49□□□□□ -1.05
USP4-205ENST00000431357 CCL19Q99731 98 aa8.49□□□□□ -1.05
USP4-205ENST00000431357 GAGE12JA6NER3 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 SPRY2O43597 315 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GAGE7O76087 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GAGE12FP0CL80 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GAGE12GP0CL81 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GAGE12IP0CL82 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GNLYP22749 145 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GATA3P23771 443 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 LINC00315P59091 139 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 CFHR3Q02985 330 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 GAGE4Q13068 117 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 MED13LQ71F56 2210 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 VCYO14598 125 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 BLCAPP62952 87 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 RRN3P1Q2M238 152 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 TMEM141Q96I45 108 aa8.48□□□□□ -1.05
USP4-205ENST00000431357 ODF3Q96PU9 254 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms