RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 CDKN1BP46527 198 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 PRR20EP86478 221 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 PRR20CP86479 221 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 PRR20DP86480 221 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 PRR20BP86481 221 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 PRR20AP86496 221 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 VWC2Q2TAL6 325 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 Q6ZQT7 251 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 HIVEP2P31629 2446 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 IGKV1OR2-108A0A075B7D4 117 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 CREBBPQ92793 2442 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 ZFAND6Q6FIF0 208 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.98□□□□□ -0.81
PTCH1-207ENST00000429896 TLN1Q9Y490 2541 aaKnown RBP9.98□□□□□ -0.81
PTCH1-207ENST00000429896 ANKRD11Q6UB99 2663 aaPredicted RBP9.98□□□□□ -0.81
PTCH1-207ENST00000429896 WNK2Q9Y3S1 2297 aa9.98□□□□□ -0.81
PTCH1-207ENST00000429896 NCOA6Q14686 2063 aaPredicted RBP9.97□□□□□ -0.81
PTCH1-207ENST00000429896 MYMXA0A1B0GTQ4 84 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.97□□□□□ -0.81
PTCH1-207ENST00000429896 GAGE2BQ13066 116 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 MPV17L2Q567V2 206 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 IGKV1-17P01599 117 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 KIR3DS1Q14943 382 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 MORN5Q5VZ52 161 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 ZC2HC1BQ5TFG8 222 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 LINC01006Q8NI28 216 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 FANCD2OSQ96PS1 177 aa9.97□□□□□ -0.81
PTCH1-207ENST00000429896 CRYGBP07316 175 aa9.96□□□□□ -0.81
PTCH1-207ENST00000429896 NOTCH2Q04721 2471 aa9.96□□□□□ -0.81
PTCH1-207ENST00000429896 C16orf54Q6UWD8 224 aa9.96□□□□□ -0.81
PTCH1-207ENST00000429896 NDUFAF3Q9BU61 184 aa9.96□□□□□ -0.81
PTCH1-207ENST00000429896 TRBV25-1A0A075B6N4 114 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 SPINK8P0C7L1 97 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 TRBV12-3P01733 135 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 C3orf79P0CE67 100 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 EIF4EBP1Q13541 118 aaPredicted RBP9.96□□□□□ -0.82
PTCH1-207ENST00000429896 APRG1Q8IVJ8 170 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 RBMY1FQ15415 496 aaKnown RBP9.96□□□□□ -0.82
PTCH1-207ENST00000429896 ESM1Q9NQ30 184 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 COX11Q9Y6N1 276 aa9.96□□□□□ -0.82
PTCH1-207ENST00000429896 ANGP03950 147 aaKnown RBP9.95□□□□□ -0.82
PTCH1-207ENST00000429896 Q8N6K4 173 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 WI2-2373I1.2A0A1W2PRP0 233 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 PRSS29PA6NIE9 313 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 FXYD5Q96DB9 178 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 IGKV2D-24A0A075B6R9 120 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 BRWD1-AS2P59051 145 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 SCRT2Q9NQ03 307 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 IGHV1OR15-1A0A075B7D0 117 aa9.95□□□□□ -0.82
PTCH1-207ENST00000429896 PFN1P07737 140 aaKnown RBP9.95□□□□□ -0.82
PTCH1-207ENST00000429896 PYY3Q5JQD4 70 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 MRPL53Q96EL3 112 aaKnown RBP9.94□□□□□ -0.82
PTCH1-207ENST00000429896 CHAC1Q9BUX1 264 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 NDUFS6O75380 124 aaKnown RBP9.94□□□□□ -0.82
PTCH1-207ENST00000429896 NDUFA7O95182 113 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 WIPF2Q8TF74 440 aaPredicted RBP9.94□□□□□ -0.82
PTCH1-207ENST00000429896 SYS1-DBNDD2H3BUS1 97 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 TRPT1Q86TN4 253 aaKnown RBP9.94□□□□□ -0.82
PTCH1-207ENST00000429896 hADV29S1A0JD25 119 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 TINCRA0A1B0GVN0 87 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 CCDC140Q96MF4 163 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 ARFGEF3Q5TH69 2177 aa9.94□□□□□ -0.82
PTCH1-207ENST00000429896 P0C879 139 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 KLF5Q13887 457 aaPredicted RBP9.93□□□□□ -0.82
PTCH1-207ENST00000429896 TAL2Q16559 108 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 WDR87Q6ZQQ6 2873 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 NOP10Q9NPE3 64 aaKnown RBP9.93□□□□□ -0.82
PTCH1-207ENST00000429896 SMAD5-AS1Q9Y6J3 95 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 XCL1P47992 114 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 HAMPP81172 84 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 PLA2G2EQ9NZK7 142 aa9.93□□□□□ -0.82
PTCH1-207ENST00000429896 F6UB75 175 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 BUB3O43684 328 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 RPL18AQ02543 176 aaKnown RBP9.92□□□□□ -0.82
PTCH1-207ENST00000429896 ADAMTSL5Q6ZMM2 481 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 C17orf77Q96MU5 243 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 PTPN13Q12923 2485 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 EREGO14944 169 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 UBE2BP63146 152 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 NAV2Q8IVL1 2488 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 CHD8Q9HCK8 2581 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 SPG11Q96JI7 2443 aa9.92□□□□□ -0.82
PTCH1-207ENST00000429896 HLA-DMBP28068 263 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 PLCE1Q9P212 2302 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 HLA-DRB4P13762 266 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 HLA-DRB4X5D2U9 266 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 SEC11AP67812 179 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 UNQ9165/PRO28630Q6UXU0 137 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 IGHV4-28A0A0C4DH34 117 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 LGALS9O00182 355 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 PRR25Q96S07 402 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 I3L3M4 83 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 C10orf99Q6UWK7 81 aa9.91□□□□□ -0.82
PTCH1-207ENST00000429896 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.9□□□□□ -0.821e-6■■■■□ 23.7
PTCH1-207ENST00000429896 H3BMM0 161 aa9.9□□□□□ -0.83
PTCH1-207ENST00000429896 UBE2WQ96B02 151 aa9.9□□□□□ -0.83
PTCH1-207ENST00000429896 TMEM243Q9BU79 118 aa9.9□□□□□ -0.83
PTCH1-207ENST00000429896 RBAKDNA6NC62 111 aa9.9□□□□□ -0.83
PTCH1-207ENST00000429896 PIFOQ8TCI5 191 aa9.9□□□□□ -0.83
PTCH1-207ENST00000429896 MRPL36Q9P0J6 103 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms