RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CHCHD1Q96BP2 118 aaKnown RBP1.75□□□□□ -2.13
USP40-204ENST00000427947 CALML5Q9NZT1 146 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 COPZ2Q9P299 210 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 MYCBP2O75592 4640 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 CADP27708 2225 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 PCNX2A6NKB5 2137 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 AKAP12Q02952 1782 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 RGPD5Q99666 1765 aa1.75□□□□□ -2.13
USP40-204ENST00000427947 ITSN1Q15811 1721 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 TOPAZ1Q8N9V7 1692 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 QRICH2Q9H0J4 1663 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 TRAV5A0A0B4J249 113 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 TRGV4A0A0C4DH28 118 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 IGHV1-58A0A0C4DH39 117 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 A8MWV9 139 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 IBA57-AS1B1ANH7 110 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 C5orf58C9J3I9 102 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 C9JAW5 83 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 PROSCO94903 275 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 FUSP35637 526 aaKnown RBP eCLIP1.74□□□□□ -2.13
USP40-204ENST00000427947 SRP9P49458 86 aaKnown RBP1.74□□□□□ -2.13
USP40-204ENST00000427947 TCTE3Q8IZS6 198 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 OR51A4Q8NGJ6 313 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 OR2T35Q8NGX2 323 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 RETNLBQ9BQ08 111 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 SMIM3Q9BZL3 60 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 PRO2289Q9P1D8 64 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 HIGD1AQ9Y241 93 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 MAP2P11137 1827 aaKnown RBP1.74□□□□□ -2.13
USP40-204ENST00000427947 EDC4Q6P2E9 1401 aaKnown RBP1.74□□□□□ -2.13
USP40-204ENST00000427947 NSD3Q9BZ95 1437 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 PTPRSQ13332 1948 aa1.74□□□□□ -2.13
USP40-204ENST00000427947 TRPM6Q9BX84 2022 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 SCN11AQ9UI33 1791 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 TRAV13-1A0A0B4J241 112 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 LOC107984640A0A0U1RRK4 108 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 H3BMG7 143 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 H3BRN7 92 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 OR2H2O95918 312 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 MT-ND4LP03901 98 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 PAEPP09466 180 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 ASAH2BP0C7U1 165 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 ZNF181Q2M3W8 571 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 TSTD1Q8NFU3 115 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 PRELID3AQ96N28 172 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 VPS25Q9BRG1 176 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 LINC00467Q9BRT7 94 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 LY96Q9Y6Y9 160 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 MON2Q7Z3U7 1717 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 FRAS1Q86XX4 4008 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 GREB1Q4ZG55 1949 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 NHSQ6T4R5 1651 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 BTAF1O14981 1849 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 KIF20BQ96Q89 1820 aa1.73□□□□□ -2.13
USP40-204ENST00000427947 RGPD3A6NKT7 1758 aaPredicted RBP1.72□□□□□ -2.13
USP40-204ENST00000427947 RGPD4Q7Z3J3 1758 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 MYH11P35749 1972 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 ABCC6O95255 1503 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 FAM208AQ9UK61 1670 aaKnown RBP1.72□□□□□ -2.13
USP40-204ENST00000427947 IGLV3-9A0A075B6K5 115 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 A0A1B0GW64 132 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 OR2T8A6NH00 312 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 ZNF705FA8MVS1 300 aaPredicted RBP1.72□□□□□ -2.13
USP40-204ENST00000427947 ZNF737O75373 536 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 SSR2P43308 183 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 RAB5CP51148 216 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 PSG9Q00887 426 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 PATE2Q6UY27 113 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 ZNF826PQ6ZT77 177 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 OR8J3Q8NGG0 315 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 CXCL16Q9H2A7 254 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 CBLN4Q9NTU7 201 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 MUC4Q99102 2169 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 RGPD2P0DJD1 1756 aa1.72□□□□□ -2.13
USP40-204ENST00000427947 LY75O60449 1722 aa1.71□□□□□ -2.13
USP40-204ENST00000427947 TOGARAM1Q9Y4F4 1720 aa1.71□□□□□ -2.13
USP40-204ENST00000427947 PKHD1P08F94 4074 aa1.71□□□□□ -2.13
USP40-204ENST00000427947 SCN9AQ15858 1988 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 M0R233 179 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 M0R2Z0 102 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 UBL3O95164 117 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 CRPP02741 224 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 BAALC-AS2P0C853 105 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 P0DMU3 169 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 FAM231AP0DMU4 169 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 FAM231CP0DMU5 169 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 GPX2P18283 190 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 CRYGSP22914 178 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 HIST1H1AQ02539 215 aaPredicted RBP1.71□□□□□ -2.14
USP40-204ENST00000427947 CDK5R1Q15078 307 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 ELOBQ15370 118 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 TMEM244Q5VVB8 128 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 PHF5AQ7RTV0 110 aaKnown RBP1.71□□□□□ -2.14
USP40-204ENST00000427947 Q8IYB0 196 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 FAM216BQ8N7L0 139 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 OR4B1Q8NGF8 309 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 OR5D14Q8NGL3 314 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 POP5Q969H6 163 aaKnown RBP1.71□□□□□ -2.14
USP40-204ENST00000427947 TXNDC17Q9BRA2 123 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 C14orf132Q9NPU4 83 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms