RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 HLA-DQA1P01909 254 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 MT-ND6P03923 174 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 TRGC2P03986 189 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 S100A8P05109 93 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 RNASE3P12724 160 aaKnown RBP8.21□□□□□ -1.1
LINC00539-201ENST00000411525 CAMPP49913 170 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 RAB4BP61018 213 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 TMEM136Q6ZRR5 245 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 TMEM256Q8N2U0 113 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 LINC00467Q9BRT7 94 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 SSBP4Q9BWG4 385 aaPredicted RBP8.21□□□□□ -1.1
LINC00539-201ENST00000411525 TIMM8BQ9Y5J9 83 aaPredicted RBP8.21□□□□□ -1.1
LINC00539-201ENST00000411525 TRAPPC1Q9Y5R8 145 aa8.21□□□□□ -1.1
LINC00539-201ENST00000411525 IGHV3-16A0A0C4DH30 117 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 MUC21A0A0G2JKD1 596 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 MUC21A0A140T8X8 626 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 CBY3A6NI87 242 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 GIG44P09565 113 aaPredicted RBP8.2□□□□□ -1.1
LINC00539-201ENST00000411525 CACNG7P62955 275 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 C1orf158Q8N1D5 194 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 GATD1Q8NB37 220 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 MUC7Q8TAX7 377 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 FRZBQ92765 325 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 LINC01587Q99440 93 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 SCRT2Q9NQ03 307 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 TP53TG3Q9ULZ0 132 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 GOLT1BQ9Y3E0 138 aa8.2□□□□□ -1.1
LINC00539-201ENST00000411525 LOC102724200A0A096LPH7 203 aaPredicted RBP8.19□□□□□ -1.1
LINC00539-201ENST00000411525 RAB5BP61020 215 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 FABP9Q0Z7S8 132 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 TWIST1Q15672 202 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 OR10AG1Q8NH19 301 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 C9orf85Q96MD7 179 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 TMEM208Q9BTX3 173 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 MRPL18Q9H0U6 180 aaKnown RBP8.19□□□□□ -1.1
LINC00539-201ENST00000411525 CSTL1Q9H114 145 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 PHLDA3Q9Y5J5 127 aa8.19□□□□□ -1.1
LINC00539-201ENST00000411525 IGHV4-4A0A075B6R2 117 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 PHOX2AO14813 284 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 NXPH4O95158 308 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 SSTP61278 116 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 ZNF415Q09FC8 603 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 CASC10Q5T4H9 136 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 SPANXN1Q5VSR9 72 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 RCHY1Q96PM5 261 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 ZMAT4Q9H898 229 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 MDFICQ9P1T7 246 aa8.18□□□□□ -1.1
LINC00539-201ENST00000411525 IGHV3OR16-12A0A075B7B8 117 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 KIR2DL5BA0A0G2JN68 375 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 KIR2DL5BA0A0G2JPC4 375 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 APCSP02743 223 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 IGHV4-30-4P0DP06 118 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 HTN1P15515 57 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 NTF3P20783 257 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 APOC4P55056 127 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 SLAQ13239 276 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 ZNF493Q6ZR52 646 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 KIR2DL5AQ8N109 375 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 ZFP82Q8N141 532 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 CSNK1G2-AS1Q8NCQ2 148 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 KIR2DL5BQ8NHK3 375 aa8.17□□□□□ -1.1
LINC00539-201ENST00000411525 TENM2Q9NT68 2774 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 M0R381 172 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 SPRY2O43597 315 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 TRGC1P0CF51 173 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 ZNF705AQ6ZN79 300 aaPredicted RBP8.16□□□□□ -1.1
LINC00539-201ENST00000411525 TMEM191AQ9H0A3 160 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 MSRB1Q9NZV6 116 aa8.16□□□□□ -1.1
LINC00539-201ENST00000411525 PRM2P04554 102 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 DMRTA1Q5VZB9 504 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 SMIM15Q7Z3B0 74 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 SBSPONQ8IVN8 264 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 C11orf72Q8NBR9 251 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 SYT8Q8NBV8 401 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 TMEM263Q8WUH6 116 aaKnown RBP8.15□□□□□ -1.1
LINC00539-201ENST00000411525 AP1S3Q96PC3 154 aa8.15□□□□□ -1.1
LINC00539-201ENST00000411525 DNAH7Q8WXX0 4024 aa8.15□□□□□ -1.11
LINC00539-201ENST00000411525 A8MZ25 164 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BKO60814 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BJP06899 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BOP23527 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BBP33778 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BDP58876 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BCP62807 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST2H2BEQ16778 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.14□□□□□ -1.11
LINC00539-201ENST00000411525 AMN1Q8IY45 258 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 RNASE8Q8TDE3 154 aaKnown RBP8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BHQ93079 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 C16orf74Q96GX8 76 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BNQ99877 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 HIST1H2BMQ99879 126 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 GSN-AS1Q9NRJ2 163 aa8.14□□□□□ -1.11
LINC00539-201ENST00000411525 UBE2CO00762 179 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 AZU1P20160 251 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 EVI2AP22794 236 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 SRIP30626 198 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 RRN3P1Q2M238 152 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 KIAA1644Q3SXP7 199 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 FAM104BQ5XKR9 115 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms