RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 C20orf204Q6ZNR8 217 aa10.24□□□□□ -0.77
COL6A3-206ENST00000409809 PRR30Q53SZ7 412 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-206ENST00000409809 PIEZO1Q92508 2521 aa10.24□□□□□ -0.77
COL6A3-206ENST00000409809 CSRP2Q16527 193 aa10.24□□□□□ -0.77
COL6A3-206ENST00000409809 GAFA1Q96PS6 74 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 A0A0J9YXY3 114 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 ODF1Q14990 250 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 HTN3P15516 51 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 PSCAO43653 123 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 TRBV12-3P01733 135 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 C10orf55Q5SWW7 151 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 TMEM61Q8N0U2 210 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 EFNA4P52798 201 aa10.23□□□□□ -0.77
COL6A3-206ENST00000409809 IGKV3D-7A0A0C4DH55 119 aa10.22□□□□□ -0.77
COL6A3-206ENST00000409809 ETV2O00321 342 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-206ENST00000409809 IGF2BP2-AS1Q96M15 143 aa10.22□□□□□ -0.77
COL6A3-206ENST00000409809 TDRG1Q3Y452 100 aa10.22□□□□□ -0.77
COL6A3-206ENST00000409809 IGKV1D-17A0A075B6S4 117 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 Q8NFD4 153 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 SPTSSBQ8NFR3 76 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 C1orf147Q96MC9 270 aaPredicted RBP10.21□□□□□ -0.77
COL6A3-206ENST00000409809 IGKV1-6A0A0C4DH72 117 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 NDUFS5O43920 106 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 FLVCR1-AS1Q8TAF5 88 aa10.21□□□□□ -0.77
COL6A3-206ENST00000409809 UNQ6494/PRO21346Q6UXR6 183 aa10.21□□□□□ -0.78
COL6A3-206ENST00000409809 E9PLN8 166 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 MT-ATP8P03928 68 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 FAM201AQ5SY85 155 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 COX7A2LO14548 114 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 RNF138Q8WVD3 245 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 GPR179Q6PRD1 2367 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 CENPVL3A0A0U1RRI6 287 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 COX7CP15954 63 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 FAM120AOSQ5T036 256 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 SMIM26A0A096LP01 95 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 C14orf132Q9NPU4 83 aa10.2□□□□□ -0.78
COL6A3-206ENST00000409809 DKK1O94907 266 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 MIAQ16674 131 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 RNF114Q9Y508 228 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 LINC01619G3V211 115 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 TEX36Q5VZQ5 186 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 TRAV26-2A0A0B4J265 109 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 TCL1BO95988 128 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 C9orf106Q8NAJ2 232 aa10.19□□□□□ -0.78
COL6A3-206ENST00000409809 CSRP1P21291 193 aaKnown RBP10.19□□□□□ -0.78
COL6A3-206ENST00000409809 MRPL36Q9P0J6 103 aaKnown RBP10.19□□□□□ -0.78
COL6A3-206ENST00000409809 PRR19A6NJB7 356 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 COX7B2Q8TF08 81 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 FAM110AQ9BQ89 295 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 MSRB2Q9Y3D2 182 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 SERP1Q9Y6X1 66 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 C16orf54Q6UWD8 224 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 NDPQ00604 133 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 CUL9Q8IWT3 2517 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 F5H768 121 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 BLCAPP62952 87 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 FAM27E3Q08E93 113 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 PIP4P2Q8N4L2 257 aa10.18□□□□□ -0.78
COL6A3-206ENST00000409809 VPREB1P12018 145 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 EFNA2O43921 213 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 HIST2H2BCQ6DN03 193 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 HIST2H2BDQ6DRA6 164 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 UBE2DNLQ8IWF7 75 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 DAND5Q8N907 189 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 APOC4P55056 127 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 RPL18AQ02543 176 aaKnown RBP10.17□□□□□ -0.78
COL6A3-206ENST00000409809 UBE2E1P51965 193 aa10.17□□□□□ -0.78
COL6A3-206ENST00000409809 IGLC6P0CF74 106 aa10.16□□□□□ -0.78
COL6A3-206ENST00000409809 B4DSR2 109 aa10.16□□□□□ -0.78
COL6A3-206ENST00000409809 TFF2Q03403 129 aa10.16□□□□□ -0.78
COL6A3-206ENST00000409809 SPAARA0A1B0GVQ0 90 aa10.16□□□□□ -0.78
COL6A3-206ENST00000409809 NOTCH4Q99466 2003 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 FOXE3Q13461 319 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 COL4A5P29400 1685 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 ELANEP08246 267 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 CLPSL1A2RUU4 121 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 C2orf70A6NJV1 201 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 TRBV30A0A0K0K1B3 111 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 FHL1Q13642 323 aa10.15□□□□□ -0.78
COL6A3-206ENST00000409809 WT1-ASQ06250 92 aa10.15□□□□□ -0.79
COL6A3-206ENST00000409809 MDFICQ9P1T7 246 aa10.15□□□□□ -0.79
COL6A3-206ENST00000409809 TP73-AS1Q9UF72 201 aa10.15□□□□□ -0.79
COL6A3-206ENST00000409809 TEX49A0A1B0GTD5 131 aa10.15□□□□□ -0.79
COL6A3-206ENST00000409809 ETDCA0A1B0GVM5 59 aa10.15□□□□□ -0.79
COL6A3-206ENST00000409809 TRAV4A0A0B4J268 109 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 ZNRF2Q8NHG8 242 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 IGLV3-1P01715 115 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 ZNF672Q499Z4 452 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-206ENST00000409809 NOTCH2Q04721 2471 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 GP9P14770 177 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 C20orf197Q8N268 126 aa10.14□□□□□ -0.79
COL6A3-206ENST00000409809 IGKV1-39P01597 117 aa10.13□□□□□ -0.79
COL6A3-206ENST00000409809 IGKV1D-39P04432 117 aa10.13□□□□□ -0.79
COL6A3-206ENST00000409809 IGHV7-4-1A0A0J9YVY3 117 aa10.13□□□□□ -0.79
COL6A3-206ENST00000409809 NXPH4O95158 308 aa10.13□□□□□ -0.79
COL6A3-206ENST00000409809 TET2Q6N021 2002 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-206ENST00000409809 WIPF3A6NGB9 483 aa10.13□□□□□ -0.79
COL6A3-206ENST00000409809 LINC01560Q8TB33 94 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 C15orf65H3BRN8 121 aa10.12□□□□□ -0.79
COL6A3-206ENST00000409809 BPY2O14599 106 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms