RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 JMJD8Q96S16 334 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 PEF1Q9UBV8 284 aaKnown RBP10.12□□□□□ -0.79
VPS54-203ENST00000409558 HELZ2Q9BYK8 2649 aaKnown RBP10.12□□□□□ -0.79
VPS54-203ENST00000409558 IGHV3OR16-12A0A075B7B8 117 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 ITPR2Q14571 2701 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 TRAV21A0A0B4J279 112 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 KNCNA6PVL3 124 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 IGHG2P01859 326 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 ZFAND2AQ8N6M9 145 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 NBPF19A0A087WUL8 3843 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 SCGB3A1Q96QR1 104 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 A6NDX4 124 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 NDUFA4O00483 81 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 COX6B1P14854 86 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 UBE2V1Q13404 147 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 IGHV3-64A0A075B6Q5 118 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 LAGE3Q14657 143 aa10.11□□□□□ -0.79
VPS54-203ENST00000409558 HOXA3O43365 443 aaPredicted RBP10.11□□□□□ -0.79
VPS54-203ENST00000409558 NXT2Q9NPJ8 142 aaKnown RBP10.11□□□□□ -0.79
VPS54-203ENST00000409558 IGKCP01834 107 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 ZNF56Q15929 161 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 DPF1Q92782 380 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 NHP2Q9NX24 153 aaKnown RBP10.1□□□□□ -0.79
VPS54-203ENST00000409558 ZNF469Q96JG9 3925 aaPredicted RBP10.1□□□□□ -0.79
VPS54-203ENST00000409558 APCP25054 2843 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 C9orf47Q6ZRZ4 202 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 CSTL1Q9H114 145 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 MUC4Q99102 2169 aa10.1□□□□□ -0.79
VPS54-203ENST00000409558 A0A0G2JLM5 398 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 TMEM190Q8WZ59 177 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 MDFICQ9P1T7 246 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 MS4A6AQ9H2W1 248 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 U3KQK5 164 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 PPBPP02775 128 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 RPL39P62891 51 aaKnown RBP10.09□□□□□ -0.79
VPS54-203ENST00000409558 ODF1Q14990 250 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 CD300EQ496F6 205 aaPredicted RBP10.09□□□□□ -0.79
VPS54-203ENST00000409558 SLURP1P55000 103 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 LGALS9BQ3B8N2 356 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 LGALS9CQ6DKI2 356 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 SMPXQ9UHP9 88 aa10.09□□□□□ -0.79
VPS54-203ENST00000409558 GAGE10A6NGK3 116 aa10.08□□□□□ -0.8
VPS54-203ENST00000409558 GATD1Q8NB37 220 aa10.08□□□□□ -0.8
VPS54-203ENST00000409558 IGHV4OR15-8A0A075B7B6 117 aa10.08□□□□□ -0.8
VPS54-203ENST00000409558 A0A087WW49 117 aa10.08□□□□□ -0.8
VPS54-203ENST00000409558 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.08□□□□□ -0.8
VPS54-203ENST00000409558 ORAOV1Q8WV07 137 aa10.08□□□□□ -0.8
VPS54-203ENST00000409558 OPRPNQ99935 248 aaPredicted RBP10.08□□□□□ -0.8
VPS54-203ENST00000409558 SUMO2P61956 95 aaKnown RBP10.07□□□□□ -0.8
VPS54-203ENST00000409558 Q8N8P6 123 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 USMG5Q96IX5 58 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 VPS25Q9BRG1 176 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 MEGF9Q9H1U4 602 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 DPM2O94777 84 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 FXYD2P54710 66 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 SRSF1Q07955 248 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS54-203ENST00000409558 NRACQ8N912 160 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 NBEAL2Q6ZNJ1 2754 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 U3KQE9 123 aa10.07□□□□□ -0.8
VPS54-203ENST00000409558 OVOL1O14753 267 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 DEFB125Q8N687 156 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 MAPKAPK5-AS1Q8N8E1 139 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 RASL10AQ92737 203 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 RNASE13Q5GAN3 156 aaKnown RBP10.06□□□□□ -0.8
VPS54-203ENST00000409558 RBAKDNA6NC62 111 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 SMIM2Q9BVW6 85 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 C2orf66Q6UXQ4 117 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 CYSLTR1Q9Y271 337 aa10.06□□□□□ -0.8
VPS54-203ENST00000409558 DUSP14O95147 198 aaKnown RBP10.05□□□□□ -0.8
VPS54-203ENST00000409558 FGF6P10767 208 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 ID1P41134 155 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 KLHL30-AS1Q8NEE0 82 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 Q96MF0 132 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 RNASE3P12724 160 aaKnown RBP10.05□□□□□ -0.8
VPS54-203ENST00000409558 SCGB1D4Q6XE38 83 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 LINC01356Q8N9X3 169 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 HIST1H4GQ99525 98 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 DPH3P1Q9H4G8 78 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 FOSL1P15407 271 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 GAGE1Q13065 139 aa10.05□□□□□ -0.8
VPS54-203ENST00000409558 HOXD3P31249 432 aaPredicted RBP10.04□□□□□ -0.8
VPS54-203ENST00000409558 APRG1Q8IVJ8 170 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 ARL6IP6Q8N6S5 226 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 P0DMU3 169 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 FAM231AP0DMU4 169 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 FAM231CP0DMU5 169 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 DEFB131AP59861 70 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 Q5PR19 223 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 CHAC1Q9BUX1 264 aa10.04□□□□□ -0.8
VPS54-203ENST00000409558 MRPL52Q86TS9 123 aaKnown RBP10.03□□□□□ -0.8
VPS54-203ENST00000409558 NDUFS8O00217 210 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 SNRPD3P62318 126 aaKnown RBP10.03□□□□□ -0.8
VPS54-203ENST00000409558 TCTEX1D4Q5JR98 221 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 TMEM170BQ5T4T1 132 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 CHTOPQ9Y3Y2 248 aaKnown RBP10.03□□□□□ -0.8
VPS54-203ENST00000409558 TRBV25-1A0A075B6N4 114 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 IGHV3-16A0A0C4DH30 117 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 SAP30O75446 220 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 PROK1P58294 105 aa10.03□□□□□ -0.8
VPS54-203ENST00000409558 BOD1L2Q8IYS8 172 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms