RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 PLECQ15149 4684 aaKnown RBP11.3□□□□□ -0.6
HMGA1-204ENST00000401473 F8W036 122 aa11.3□□□□□ -0.6
HMGA1-204ENST00000401473 LGALS9BQ3B8N2 356 aa11.3□□□□□ -0.6
HMGA1-204ENST00000401473 RPP21Q9H633 154 aaKnown RBP11.3□□□□□ -0.6
HMGA1-204ENST00000401473 DYNC2H1Q8NCM8 4307 aaKnown RBP11.3□□□□□ -0.6
HMGA1-204ENST00000401473 M0R2P5 195 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 SFRP2Q96HF1 295 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 SSBP4Q9BWG4 385 aaPredicted RBP11.29□□□□□ -0.6
HMGA1-204ENST00000401473 SEC11CQ9BY50 192 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 OSTCQ9NRP0 149 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 CXCL1P09341 107 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 DAD1P61803 113 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 ZNF876PQ49A33 203 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 DMRTA1Q5VZB9 504 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 MUC7Q8TAX7 377 aa11.29□□□□□ -0.6
HMGA1-204ENST00000401473 MUC21A0A0G2JKD1 596 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 MUC21A0A140T8X8 626 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 GATCO43716 136 aaKnown RBP11.28□□□□□ -0.6
HMGA1-204ENST00000401473 S100A1P23297 94 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 C10orf91Q5T1B1 145 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 POM121L12Q8N7R1 296 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 GTSF1Q8WW33 167 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 V9GYV3 84 aa11.28□□□□□ -0.6
HMGA1-204ENST00000401473 TEX48A0A1B0GUV7 120 aa11.27□□□□□ -0.6
HMGA1-204ENST00000401473 IGLC6P0CF74 106 aa11.27□□□□□ -0.6
HMGA1-204ENST00000401473 SNAI2O43623 268 aa11.27□□□□□ -0.61
HMGA1-204ENST00000401473 RPS20P60866 119 aaKnown RBP11.27□□□□□ -0.61
HMGA1-204ENST00000401473 OR10AG1Q8NH19 301 aa11.27□□□□□ -0.61
HMGA1-204ENST00000401473 OR5AL1P0C617 328 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 SSTP61278 116 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 PNRC1Q12796 327 aaPredicted RBP11.26□□□□□ -0.61
HMGA1-204ENST00000401473 OR10G8Q8NGN5 311 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 PHLDA1Q8WV24 401 aaPredicted RBP11.26□□□□□ -0.61
HMGA1-204ENST00000401473 C18orf15Q96N68 181 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 JPT2Q9H910 190 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 PHLDA3Q9Y5J5 127 aa11.26□□□□□ -0.61
HMGA1-204ENST00000401473 TRGV2A0A075B6R0 118 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 XKRY2A2RUG3 117 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 MED14OSP0DP75 135 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 ZFAND6Q6FIF0 208 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 FER1L6-AS1Q8NA97 138 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 PTH2Q96A98 100 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 TPPP3Q9BW30 176 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 A8MWL6 223 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 CT83Q5H943 113 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 LYZL1Q6UWQ5 148 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 C15orf54Q8N8G6 183 aa11.25□□□□□ -0.61
HMGA1-204ENST00000401473 M0R381 172 aa11.24□□□□□ -0.61
HMGA1-204ENST00000401473 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
HMGA1-204ENST00000401473 RNF212Q495C1 297 aa11.24□□□□□ -0.61
HMGA1-204ENST00000401473 CARHSP1Q9Y2V2 147 aaKnown RBP11.24□□□□□ -0.61
HMGA1-204ENST00000401473 DEFB131BA0A096LNP1 70 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 IGHV3-53P01767 116 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 HTN3P15516 51 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 HOXA5P20719 270 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 TSKUQ8WUA8 353 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 ZNF479Q96JC4 524 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 MSRB1Q9NZV6 116 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 A0A1W2PPQ1 181 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 ATP5G1P05496 136 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 CASC10Q5T4H9 136 aa11.23□□□□□ -0.61
HMGA1-204ENST00000401473 F2Z2F3 143 aa11.22□□□□□ -0.61
HMGA1-204ENST00000401473 PIK3CD-AS1Q5SR53 167 aa11.22□□□□□ -0.61
HMGA1-204ENST00000401473 CFAP126Q5VTH2 177 aa11.22□□□□□ -0.61
HMGA1-204ENST00000401473 SAMD10Q9BYL1 202 aa11.22□□□□□ -0.61
HMGA1-204ENST00000401473 TRAV10A0A0B4J240 114 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 HIGD1CA8MV81 97 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 NXPH4O95158 308 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 NTF3P20783 257 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 SPANXN1Q5VSR9 72 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 PGLYRP4Q96LB8 373 aa11.21□□□□□ -0.61
HMGA1-204ENST00000401473 KMT2CQ8NEZ4 4911 aaKnown RBP11.21□□□□□ -0.62
HMGA1-204ENST00000401473 TRAV4A0A0B4J268 109 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 F5H768 121 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 C3orf84H3BNL1 204 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 CTRLP40313 264 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 CEMP1Q6PRD7 247 aaPredicted RBP11.21□□□□□ -0.62
HMGA1-204ENST00000401473 ZFP82Q8N141 532 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 OR4C5Q8NGB2 326 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 NDUFAF3Q9BU61 184 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 CNFNQ9BYD5 112 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 GFRA4Q9GZZ7 299 aa11.21□□□□□ -0.62
HMGA1-204ENST00000401473 SMIM27A0A1W2PRY6 76 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 FAM231BA6NCW3 169 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 RS1O15537 224 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 FHL2Q14192 279 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 SYT8Q8NBV8 401 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 NUP35Q8NFH5 326 aa11.2□□□□□ -0.62
HMGA1-204ENST00000401473 IGHV4-4A0A075B6R2 117 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 IGHV3-73A0A0B4J1V6 119 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 APOC3P02656 99 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 MT-ND4LP03901 98 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 CRYGDP07320 174 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 UFSP1Q6NVU6 142 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 ANAPC16Q96DE5 110 aa11.19□□□□□ -0.62
HMGA1-204ENST00000401473 A0A087WWL8 130 aa11.18□□□□□ -0.62
HMGA1-204ENST00000401473 A8MWV9 139 aa11.18□□□□□ -0.62
HMGA1-204ENST00000401473 PPP1R2P9O14990 202 aa11.18□□□□□ -0.62
HMGA1-204ENST00000401473 WDR73Q6P4I2 378 aa11.18□□□□□ -0.62
HMGA1-204ENST00000401473 Q6ZSN1 163 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms