RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 LINC01560Q8TB33 94 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 A0A0J9YY99 117 aa12.08□□□□□ -0.48
CKAP4-201ENST00000378026 TRBV20-1A0A075B6N2 111 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 C9JAW5 83 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 IGKV3-7A0A075B6H7 116 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 CLPSL1A2RUU4 121 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 B9A039 149 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 G3V318 75 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 ANKHD1Q8IWZ3 2542 aaKnown RBP12.07□□□□□ -0.48
CKAP4-201ENST00000378026 CRYGDP07320 174 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 TSPEAR-AS2P59090 65 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 RPL39P62891 51 aaKnown RBP12.07□□□□□ -0.48
CKAP4-201ENST00000378026 LYRM7Q5U5X0 104 aa12.07□□□□□ -0.48
CKAP4-201ENST00000378026 CD3EP07766 207 aa12.06□□□□□ -0.48
CKAP4-201ENST00000378026 TP53TG1Q9Y2A0 90 aa12.06□□□□□ -0.48
CKAP4-201ENST00000378026 IGFL3Q6UXB1 125 aa12.06□□□□□ -0.48
CKAP4-201ENST00000378026 DPH3P1Q9H4G8 78 aa12.06□□□□□ -0.48
CKAP4-201ENST00000378026 IGHV3-64A0A075B6Q5 118 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 GNRH2O43555 120 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 PRO3102Q9H379 93 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 SLC25A20O43772 301 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 VMO1Q7Z5L0 202 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 C10orf126Q8N4M7 172 aa12.05□□□□□ -0.48
CKAP4-201ENST00000378026 BEX4Q9NWD9 120 aaPredicted RBP12.05□□□□□ -0.48
CKAP4-201ENST00000378026 COLQQ9Y215 455 aaPredicted RBP12.05□□□□□ -0.48
CKAP4-201ENST00000378026 OTOGLQ3ZCN5 2332 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 IGHV4-4A0A075B6R2 117 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 HERVK_113P61574 105 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 METTL26Q96S19 204 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 RNF223E7ERA6 249 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 ATP6V0E1O15342 81 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 TSHBP01222 138 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 AJUBAQ96IF1 538 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 C20orf173Q96LM9 149 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 CCDC140Q96MF4 163 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 PRO1854Q9UHT4 67 aa12.04□□□□□ -0.48
CKAP4-201ENST00000378026 MAP1AP78559 2803 aaPredicted RBP12.03□□□□□ -0.48
CKAP4-201ENST00000378026 IGLV4-69A0A075B6H9 119 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 IGHV3-30P01768 117 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 IGHV3-30-5P0DP03 117 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 RNASE4P34096 147 aaKnown RBP12.03□□□□□ -0.48
CKAP4-201ENST00000378026 GAGE5Q13069 117 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 GAGE6Q13070 117 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 LINC00527Q9UJ94 153 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 PTPRZ1P23471 2315 aaPredicted RBP12.03□□□□□ -0.48
CKAP4-201ENST00000378026 ZFHX3Q15911 3703 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 C9orf47Q6ZRZ4 202 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 JPT2Q9H910 190 aa12.03□□□□□ -0.48
CKAP4-201ENST00000378026 F6UB75 175 aa12.02□□□□□ -0.48
CKAP4-201ENST00000378026 ASIPP42127 132 aa12.02□□□□□ -0.48
CKAP4-201ENST00000378026 C1orf122Q6ZSJ8 110 aa12.02□□□□□ -0.48
CKAP4-201ENST00000378026 LY6G5BQ8NDX9 201 aa12.02□□□□□ -0.48
CKAP4-201ENST00000378026 TRAV4A0A0B4J268 109 aa12.02□□□□□ -0.49
CKAP4-201ENST00000378026 CRLF1O75462 422 aa12.02□□□□□ -0.49
CKAP4-201ENST00000378026 RPL11P62913 178 aaKnown RBP12.02□□□□□ -0.49
CKAP4-201ENST00000378026 Q1RN00 199 aa12.02□□□□□ -0.49
CKAP4-201ENST00000378026 TRAV2A0A0B4J234 112 aa12.02□□□□□ -0.49
CKAP4-201ENST00000378026 IGHV4-39P01824 125 aa12.02□□□□□ -0.49
CKAP4-201ENST00000378026 ZFHX2Q9C0A1 2572 aaPredicted RBP12.01□□□□□ -0.49
CKAP4-201ENST00000378026 A4D1N5 150 aa12.01□□□□□ -0.49
CKAP4-201ENST00000378026 F5H697 171 aa12.01□□□□□ -0.49
CKAP4-201ENST00000378026 PRR30Q53SZ7 412 aaPredicted RBP12.01□□□□□ -0.49
CKAP4-201ENST00000378026 Q8N9W7 124 aa12.01□□□□□ -0.49
CKAP4-201ENST00000378026 ODF3BA8MYP8 253 aa12.01□□□□□ -0.49
CKAP4-201ENST00000378026 NTN5Q8WTR8 489 aaPredicted RBP12.01□□□□□ -0.49
CKAP4-201ENST00000378026 SNCGO76070 127 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 GRNP28799 593 aaKnown RBP12□□□□□ -0.49
CKAP4-201ENST00000378026 GAGE2BQ13066 116 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 GAGE2EQ4V326 116 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 OPRPNQ99935 248 aaPredicted RBP12□□□□□ -0.49
CKAP4-201ENST00000378026 GAGE2DQ9UEU5 116 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 A0A087WWL8 130 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 TMEM262E9PQX1 116 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 NHLRC4P0CG21 123 aaPredicted RBP12□□□□□ -0.49
CKAP4-201ENST00000378026 ZNRF2Q8NHG8 242 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 CEP295Q9C0D2 2601 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 TLN1Q9Y490 2541 aaKnown RBP12□□□□□ -0.49
CKAP4-201ENST00000378026 GPHB5Q86YW7 130 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 SLC25A29Q8N8R3 303 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 TIMD4Q96H15 378 aa12□□□□□ -0.49
CKAP4-201ENST00000378026 LGALS3P17931 250 aaKnown RBP11.99□□□□□ -0.49
CKAP4-201ENST00000378026 PMVKQ15126 192 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 DEFB123Q8N688 67 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 VCX2Q9H322 139 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 TRAV21A0A0B4J279 112 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 ELANEP08246 267 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 ZFAND2AQ8N6M9 145 aa11.99□□□□□ -0.49
CKAP4-201ENST00000378026 FAM110DQ8TAY7 271 aaPredicted RBP11.99□□□□□ -0.49
CKAP4-201ENST00000378026 CCDC179H3BU77 68 aa11.98□□□□□ -0.49
CKAP4-201ENST00000378026 J3QQQ9 107 aa11.98□□□□□ -0.49
CKAP4-201ENST00000378026 SBSPONQ8IVN8 264 aa11.98□□□□□ -0.49
CKAP4-201ENST00000378026 Q8N6K4 173 aa11.98□□□□□ -0.49
CKAP4-201ENST00000378026 ZNF256Q9Y2P7 627 aaPredicted RBP11.98□□□□□ -0.49
CKAP4-201ENST00000378026 TCF15Q12870 199 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 TTC32Q5I0X7 151 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 OR10J6PQ8NGY7 276 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 CELSR1Q9NYQ6 3014 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 TEX49A0A1B0GTD5 131 aa11.97□□□□□ -0.49
CKAP4-201ENST00000378026 EIF4EBP3O60516 100 aaPredicted RBP11.97□□□□□ -0.49
CKAP4-201ENST00000378026 FAM74A4Q5TZK3 123 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 162.9 ms