RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 C20orf78Q9BR46 151 aa10.71□□□□□ -0.69
COL4A1-201ENST00000375820 PYGO2Q9BRQ0 406 aa10.71□□□□□ -0.69
COL4A1-201ENST00000375820 ZNF493Q6ZR52 646 aa10.71□□□□□ -0.69
COL4A1-201ENST00000375820 LINC00311Q8N616 119 aa10.71□□□□□ -0.7
COL4A1-201ENST00000375820 SEM1Q6ZVN7 128 aa10.71□□□□□ -0.7
COL4A1-201ENST00000375820 B5MCH6 92 aa10.7□□□□□ -0.7
COL4A1-201ENST00000375820 K7EQD1 137 aa10.7□□□□□ -0.7
COL4A1-201ENST00000375820 IGLV1-44P01699 117 aa10.7□□□□□ -0.7
COL4A1-201ENST00000375820 RPL39P62891 51 aaKnown RBP10.7□□□□□ -0.7
COL4A1-201ENST00000375820 AJUBAQ96IF1 538 aa10.7□□□□□ -0.7
COL4A1-201ENST00000375820 MUSTN1Q8IVN3 82 aa10.7□□□□□ -0.7
COL4A1-201ENST00000375820 FNDC1Q4ZHG4 1894 aaPredicted RBP10.69□□□□□ -0.7
COL4A1-201ENST00000375820 ATP6V0E2Q8NHE4 81 aa10.69□□□□□ -0.7
COL4A1-201ENST00000375820 IGHV2-70P01814 119 aa10.69□□□□□ -0.7
COL4A1-201ENST00000375820 WT1P19544 449 aaPredicted RBP10.69□□□□□ -0.7
COL4A1-201ENST00000375820 IGFL3Q6UXB1 125 aa10.69□□□□□ -0.7
COL4A1-201ENST00000375820 ICOSQ9Y6W8 199 aa10.69□□□□□ -0.7
COL4A1-201ENST00000375820 UBE2AP49459 152 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 C9orf47Q6ZRZ4 202 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 A0A0J9YXV3 536 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 ZNF747Q9BV97 191 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 SND1-IT1Q9HBX3 110 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 FRMPD3Q5JV73 1810 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 IGHV4OR15-8A0A075B7B6 117 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 A0A087WW49 117 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 TTTY13Q9BZ97 58 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 COX7A2LO14548 114 aa10.68□□□□□ -0.7
COL4A1-201ENST00000375820 EML6Q6ZMW3 1958 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 CFPP27918 469 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 DEFB135Q30KP9 77 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRSS47A8MTI9 375 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 FUSP35637 526 aaKnown RBP eCLIP10.67□□□□□ -0.7
COL4A1-201ENST00000375820 CCL18P55774 89 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 C8orf31Q8N9H6 132 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRR20EP86478 221 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRR20CP86479 221 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRR20DP86480 221 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRR20BP86481 221 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 PRR20AP86496 221 aa10.67□□□□□ -0.7
COL4A1-201ENST00000375820 CENPVL3A0A0U1RRI6 287 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 C9orf66Q5T8R8 295 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 RNF183Q96D59 192 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 DEFB113Q30KQ7 82 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 TSC2P49815 1807 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 RLFQ13129 1914 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 PRAC2D3DTV9 90 aa10.66□□□□□ -0.7
COL4A1-201ENST00000375820 TMEM258P61165 79 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 C16orf74Q96GX8 76 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 ZSWIM8A7E2V4 1837 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 IGHV7-81A0A0B4J1V7 117 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 VSIG2Q96IQ7 327 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 NUPR1O60356 82 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 C11orf53Q8IXP5 236 aa10.65□□□□□ -0.7
COL4A1-201ENST00000375820 CLEC2BQ92478 149 aa10.65□□□□□ -0.71
COL4A1-201ENST00000375820 C11orf52Q96A22 123 aa10.65□□□□□ -0.71
COL4A1-201ENST00000375820 KIAA1671Q9BY89 1806 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 SPART-AS1P0CW21 52 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 Q8N1Y9 231 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 PLCE1Q9P212 2302 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 A4D1N5 150 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 CHD3Q12873 2000 aaKnown RBP10.64□□□□□ -0.71
COL4A1-201ENST00000375820 ATP5G1P05496 136 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 MRPL23Q16540 153 aaKnown RBP10.64□□□□□ -0.71
COL4A1-201ENST00000375820 TDRG1Q3Y452 100 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 PLXNA3P51805 1871 aa10.64□□□□□ -0.71
COL4A1-201ENST00000375820 HHLA3Q9XRX5 114 aa10.63□□□□□ -0.71
COL4A1-201ENST00000375820 FGF23Q9GZV9 251 aaPredicted RBP10.63□□□□□ -0.71
COL4A1-201ENST00000375820 TM2D2Q9BX73 214 aa10.63□□□□□ -0.71
COL4A1-201ENST00000375820 IGLL5B9A064 214 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 ANKRD39Q53RE8 183 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 THSD7BQ9C0I4 1608 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 FANCD2OSQ96PS1 177 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 A0A1B0GX51 115 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 LRCOL1A6NCL2 159 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 HERV-K104P63124 156 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 NREPQ16612 68 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 TMEM61Q8N0U2 210 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 KLK12Q9UKR0 248 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 SRSF2Q01130 221 aaKnown RBP10.62□□□□□ -0.71
COL4A1-201ENST00000375820 PLA2G2CQ5R387 149 aa10.62□□□□□ -0.71
COL4A1-201ENST00000375820 OPRPNQ99935 248 aaPredicted RBP10.61□□□□□ -0.71
COL4A1-201ENST00000375820 TNRC6BQ9UPQ9 1833 aaKnown RBP10.61□□□□□ -0.71
COL4A1-201ENST00000375820 NCKAP5O14513 1909 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 H0Y9J4 135 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 I3L2K1 104 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 H3BUA1 57 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 ZFP36P26651 326 aaKnown RBP10.61□□□□□ -0.71
COL4A1-201ENST00000375820 NCOR1P1Q9H4R4 102 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 MRPL36Q9P0J6 103 aaKnown RBP10.61□□□□□ -0.71
COL4A1-201ENST00000375820 SIVA1O15304 175 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 HIST2H2BDQ6DRA6 164 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 SPANXA1Q9NS26 97 aa10.61□□□□□ -0.71
COL4A1-201ENST00000375820 C10orf91Q5T1B1 145 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 CEMP1Q6PRD7 247 aaPredicted RBP10.6□□□□□ -0.71
COL4A1-201ENST00000375820 A0A096LNI7 61 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 K7EIM0 57 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 IGKV2-24A0A0C4DH68 120 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 ETV2O00321 342 aaPredicted RBP10.6□□□□□ -0.71
COL4A1-201ENST00000375820 SPTAN1Q13813 2472 aaKnown RBP10.6□□□□□ -0.71
COL4A1-201ENST00000375820 NDUFB1O75438 58 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms