RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 PCP2Q8IVA1 136 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 FXYD5Q96DB9 178 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 CAMK2N2Q96S95 79 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 HEATR5AQ86XA9 2040 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 ESM1Q9NQ30 184 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 TMEM14CQ9P0S9 112 aa11.23□□□□□ -0.61
TRAF1-201ENST00000373887 PLA2G5P39877 138 aa11.22□□□□□ -0.61
TRAF1-201ENST00000373887 ZGRF1Q86YA3 2104 aa11.22□□□□□ -0.61
TRAF1-201ENST00000373887 GATA1P15976 413 aaPredicted RBP11.22□□□□□ -0.61
TRAF1-201ENST00000373887 SPTAN1Q13813 2472 aaKnown RBP11.22□□□□□ -0.61
TRAF1-201ENST00000373887 SH2D6Q7Z4S9 175 aa11.22□□□□□ -0.61
TRAF1-201ENST00000373887 PYGO2Q9BRQ0 406 aa11.22□□□□□ -0.61
TRAF1-201ENST00000373887 C20orf78Q9BR46 151 aa11.22□□□□□ -0.61
TRAF1-201ENST00000373887 BLCAPP62952 87 aa11.21□□□□□ -0.61
TRAF1-201ENST00000373887 ZNF493Q6ZR52 646 aa11.21□□□□□ -0.61
TRAF1-201ENST00000373887 IGLC7A0M8Q6 106 aa11.21□□□□□ -0.61
TRAF1-201ENST00000373887 IGFL2Q6UWQ7 119 aa11.21□□□□□ -0.61
TRAF1-201ENST00000373887 ZFP2Q6ZN57 461 aa11.21□□□□□ -0.61
TRAF1-201ENST00000373887 FAM231DQ6ZW35 169 aa11.21□□□□□ -0.62
TRAF1-201ENST00000373887 MP68P56378 58 aa11.21□□□□□ -0.62
TRAF1-201ENST00000373887 VSIG2Q96IQ7 327 aa11.21□□□□□ -0.62
TRAF1-201ENST00000373887 K7EN84 100 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 CENPVL3A0A0U1RRI6 287 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 A0A1B0GX51 115 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 NDUFB1O75438 58 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 NDUFC2O95298 119 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 PSMB8P28062 276 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 C9orf47Q6ZRZ4 202 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 RPL39LQ96EH5 51 aaKnown RBP11.2□□□□□ -0.62
TRAF1-201ENST00000373887 NPBQ8NG41 125 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 DOCK10Q96BY6 2186 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 DAND5Q8N907 189 aa11.2□□□□□ -0.62
TRAF1-201ENST00000373887 RITA1Q96K30 269 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 ELANEP08246 267 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 GYPEP15421 78 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 FOXI2Q6ZQN5 318 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 C2orf16Q68DN1 1984 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 DENND4CQ5VZ89 1909 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 UBE2AP49459 152 aa11.19□□□□□ -0.62
TRAF1-201ENST00000373887 PRSS47A8MTI9 375 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 SIVA1O15304 175 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 LTAP01374 205 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 SMIM20Q8N5G0 67 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 LINC00311Q8N616 119 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 MUC6Q6W4X9 2439 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 IGLC1P0CG04 106 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 NREPQ16612 68 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 C11orf53Q8IXP5 236 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 RNF183Q96D59 192 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 DOCK11Q5JSL3 2073 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 MUSTN1Q8IVN3 82 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 ICOSQ9Y6W8 199 aa11.18□□□□□ -0.62
TRAF1-201ENST00000373887 C10orf105Q8TEF2 133 aa11.17□□□□□ -0.62
TRAF1-201ENST00000373887 C1orf147Q96MC9 270 aaPredicted RBP11.17□□□□□ -0.62
TRAF1-201ENST00000373887 SND1-IT1Q9HBX3 110 aa11.17□□□□□ -0.62
TRAF1-201ENST00000373887 ACYP1P07311 99 aa11.17□□□□□ -0.62
TRAF1-201ENST00000373887 HERV-K104P63124 156 aa11.17□□□□□ -0.62
TRAF1-201ENST00000373887 IGF2-ASQ6U949 168 aa11.17□□□□□ -0.62
TRAF1-201ENST00000373887 FAM236AA0A1B0GUQ0 79 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 FAM236BA0A1B0GV22 79 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 SRSF2Q01130 221 aaKnown RBP11.16□□□□□ -0.62
TRAF1-201ENST00000373887 MRPL23Q16540 153 aaKnown RBP11.16□□□□□ -0.62
TRAF1-201ENST00000373887 SEM1Q6ZVN7 128 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 GP9P14770 177 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 KAAG1Q9UBP8 84 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 ZFP36P26651 326 aaKnown RBP11.16□□□□□ -0.62
TRAF1-201ENST00000373887 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.16□□□□□ -0.62
TRAF1-201ENST00000373887 A0A0B4J2C4 111 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 K7EQD1 137 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 PIFOQ8TCI5 191 aa11.16□□□□□ -0.62
TRAF1-201ENST00000373887 COX7A2LO14548 114 aa11.15□□□□□ -0.62
TRAF1-201ENST00000373887 PROP1O75360 226 aa11.15□□□□□ -0.62
TRAF1-201ENST00000373887 F8W735 103 aaPredicted RBP11.15□□□□□ -0.62
TRAF1-201ENST00000373887 RBAKDNA6NC62 111 aa11.15□□□□□ -0.62
TRAF1-201ENST00000373887 ZNF747Q9BV97 191 aa11.15□□□□□ -0.62
TRAF1-201ENST00000373887 ZNF491Q8N8L2 437 aa11.15□□□□□ -0.62
TRAF1-201ENST00000373887 AGPAT4-IT1Q9H0P7 198 aa11.15□□□□□ -0.63
TRAF1-201ENST00000373887 PCNX2A6NKB5 2137 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 C19orf84I3L1E1 186 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 CDPF1Q6NVV7 123 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 IGLL5B9A064 214 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 SEC61GP60059 68 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 C9orf66Q5T8R8 295 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 GTF3C1Q12789 2109 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 Q8NA96 180 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 TMEM61Q8N0U2 210 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 C11orf52Q96A22 123 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 MRPL36Q9P0J6 103 aaKnown RBP11.14□□□□□ -0.63
TRAF1-201ENST00000373887 DEFB4AO15263 64 aa11.14□□□□□ -0.63
TRAF1-201ENST00000373887 H0Y9J4 135 aa11.13□□□□□ -0.63
TRAF1-201ENST00000373887 FGF23Q9GZV9 251 aaPredicted RBP11.13□□□□□ -0.63
TRAF1-201ENST00000373887 C4orf48Q5BLP8 95 aa11.13□□□□□ -0.63
TRAF1-201ENST00000373887 ATP6V0E2Q8NHE4 81 aa11.13□□□□□ -0.63
TRAF1-201ENST00000373887 OPRPNQ99935 248 aaPredicted RBP11.13□□□□□ -0.63
TRAF1-201ENST00000373887 PRORYQ9H606 182 aa11.13□□□□□ -0.63
TRAF1-201ENST00000373887 BRK1Q8WUW1 75 aa11.13□□□□□ -0.63
TRAF1-201ENST00000373887 CACNA1HO95180 2353 aa11.12□□□□□ -0.63
TRAF1-201ENST00000373887 CCL18P55774 89 aa11.12□□□□□ -0.63
TRAF1-201ENST00000373887 IGHV4OR15-8A0A075B7B6 117 aa11.12□□□□□ -0.63
TRAF1-201ENST00000373887 A0A087WW49 117 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms