RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 CLPSL1A2RUU4 121 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 G3V318 75 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 GAGE5Q13069 117 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 GAGE6Q13070 117 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 PRR9Q5T870 116 aa10.47□□□□□ -0.73
USP49-201ENST00000373006 LGALS1P09382 135 aaKnown RBP10.46□□□□□ -0.73
USP49-201ENST00000373006 SMIM2Q9BVW6 85 aa10.46□□□□□ -0.73
USP49-201ENST00000373006 RAXQ9Y2V3 346 aa10.46□□□□□ -0.73
USP49-201ENST00000373006 CCDC179H3BU77 68 aa10.46□□□□□ -0.74
USP49-201ENST00000373006 DEFB1P60022 68 aa10.46□□□□□ -0.74
USP49-201ENST00000373006 ERG28Q9UKR5 140 aa10.46□□□□□ -0.74
USP49-201ENST00000373006 RBAKDNA6NC62 111 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 IGF2-ASQ6U949 168 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 C14orf178Q8N769 122 aaPredicted RBP10.45□□□□□ -0.74
USP49-201ENST00000373006 KLHL30-AS1Q8NEE0 82 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 SLC50A1Q9BRV3 221 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 BEX4Q9NWD9 120 aaPredicted RBP10.45□□□□□ -0.74
USP49-201ENST00000373006 HIVEP3Q5T1R4 2406 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 TSPAN13O95857 204 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 SMCPP49901 116 aaPredicted RBP10.45□□□□□ -0.74
USP49-201ENST00000373006 Q8N9W7 124 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 PLEKHB2Q96CS7 222 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 PRADC1Q9BSG0 188 aa10.45□□□□□ -0.74
USP49-201ENST00000373006 CACNA1AO00555 2505 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 ATP6V0E1O15342 81 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 Q8N6K4 173 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 CCDC140Q96MF4 163 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 ZNF815PA8K554 130 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 SUMO2P61956 95 aaKnown RBP10.44□□□□□ -0.74
USP49-201ENST00000373006 CDSNQ15517 529 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 RASL10AQ92737 203 aa10.44□□□□□ -0.74
USP49-201ENST00000373006 MGPP08493 103 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 SLC25A16P16260 332 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 ATP5J2P56134 94 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 TTC32Q5I0X7 151 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 NEXN-AS1Q8NBZ9 246 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 DLX4Q92988 240 aaPredicted RBP10.43□□□□□ -0.74
USP49-201ENST00000373006 TIMD4Q96H15 378 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 NOTCH3Q9UM47 2321 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 C2orf66Q6UXQ4 117 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 RAX2Q96IS3 184 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 C16orf92Q96LL3 132 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 CUBNO60494 3623 aa10.43□□□□□ -0.74
USP49-201ENST00000373006 TRAV12-1A0A0B4J245 112 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 S100A4P26447 101 aaKnown RBP10.42□□□□□ -0.74
USP49-201ENST00000373006 BAALCQ8WXS3 180 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 CSPG4Q6UVK1 2322 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 M0R1W7 72 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 CCL21O00585 134 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 NBL1P41271 181 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 TOMM6Q96B49 74 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 ZFYVE26Q68DK2 2539 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 ZFP36P26651 326 aaKnown RBP10.42□□□□□ -0.74
USP49-201ENST00000373006 ORMDL2Q53FV1 153 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 LINC00527Q9UJ94 153 aa10.42□□□□□ -0.74
USP49-201ENST00000373006 DOPEY2Q9Y3R5 2298 aa10.41□□□□□ -0.74
USP49-201ENST00000373006 METTL26Q96S19 204 aa10.41□□□□□ -0.74
USP49-201ENST00000373006 GAGE2BQ13066 116 aa10.41□□□□□ -0.74
USP49-201ENST00000373006 GAGE2EQ4V326 116 aa10.41□□□□□ -0.74
USP49-201ENST00000373006 FAM110DQ8TAY7 271 aaPredicted RBP10.41□□□□□ -0.74
USP49-201ENST00000373006 GAGE2DQ9UEU5 116 aa10.41□□□□□ -0.74
USP49-201ENST00000373006 IGHV4-4A0A075B6R2 117 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 SNCGO76070 127 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 CFAP126Q5VTH2 177 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 C9orf47Q6ZRZ4 202 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 AJUBAQ96IF1 538 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 C20orf173Q96LM9 149 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 RPL32P62910 135 aaKnown RBP10.4□□□□□ -0.74
USP49-201ENST00000373006 CARD19Q96LW7 228 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 FAM110AQ9BQ89 295 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 PHLDA3Q9Y5J5 127 aa10.4□□□□□ -0.74
USP49-201ENST00000373006 IGKV3-7A0A075B6H7 116 aa10.4□□□□□ -0.75
USP49-201ENST00000373006 ACACBO00763 2458 aa10.4□□□□□ -0.75
USP49-201ENST00000373006 TRAV4A0A0B4J268 109 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 ANKRD29Q8N6D5 301 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 GNRH2O43555 120 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 CRLF1O75462 422 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 DUSP14O95147 198 aaKnown RBP10.39□□□□□ -0.75
USP49-201ENST00000373006 EBI3Q14213 229 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 SORL1Q92673 2214 aa10.39□□□□□ -0.75
USP49-201ENST00000373006 Q1RN00 199 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 C9JAW5 83 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 FAM159AQ6UWV7 190 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 A8MWV9 139 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 F6UB75 175 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 DPH3P1Q9H4G8 78 aa10.38□□□□□ -0.75
USP49-201ENST00000373006 RNASE4P34096 147 aaKnown RBP10.37□□□□□ -0.75
USP49-201ENST00000373006 PPDPFLQ8WWR9 84 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 RNF223E7ERA6 249 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 TCL1BO95988 128 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 RPL11P62913 178 aaKnown RBP10.37□□□□□ -0.75
USP49-201ENST00000373006 TRPT1Q86TN4 253 aaKnown RBP10.37□□□□□ -0.75
USP49-201ENST00000373006 EEF1AKMT3Q96AZ1 226 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 TNFRSF18Q9Y5U5 241 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 VPS13CQ709C8 3753 aa10.37□□□□□ -0.75
USP49-201ENST00000373006 GAGE12JA6NER3 117 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 LINC01619G3V211 115 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 GAGE7O76087 117 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 IGHV4-39P01824 125 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 GAGE12FP0CL80 117 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms