RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IGHV4-28A0A0C4DH34 117 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 INAFM1C9JVW0 142 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 FGF6P10767 208 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 CUL9Q8IWT3 2517 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 C9JQL5 133 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 V9GYV3 84 aa12.14□□□□□ -0.47
PTPRF-201ENST00000359947 ETDCA0A1B0GVM5 59 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 K7EQD1 137 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 NPBQ8NG41 125 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 HHLA3Q9XRX5 114 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 CT83Q5H943 113 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 CLPSL1A2RUU4 121 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 DNAJC9-AS1A6NH13 148 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 C2orf70A6NJV1 201 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 DEFB1P60022 68 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 IGF2-ASQ6U949 168 aa12.13□□□□□ -0.47
PTPRF-201ENST00000359947 RPL39LQ96EH5 51 aaKnown RBP12.13□□□□□ -0.47
PTPRF-201ENST00000359947 A8MWP6 167 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 FAM231BA6NCW3 169 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 GATA1P15976 413 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-201ENST00000359947 Q9H8V8 135 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 SMIM27A0A1W2PRY6 76 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 IGHG4P01861 327 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 ADCYAP1P18509 176 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 FREM1Q5H8C1 2179 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 NDUFS6O75380 124 aaKnown RBP12.12□□□□□ -0.47
PTPRF-201ENST00000359947 SEM1Q6ZVN7 128 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 Q8N9W7 124 aa12.12□□□□□ -0.47
PTPRF-201ENST00000359947 CSPG4Q6UVK1 2322 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 TRAV4A0A0B4J268 109 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 WFDC11Q8NEX6 87 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 RS1O15537 224 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 PYY3Q5JQD4 70 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 ZNF664Q8N3J9 261 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 TRAV13-2A0A0B4J235 113 aa12.11□□□□□ -0.47
PTPRF-201ENST00000359947 SRSF2Q01130 221 aaKnown RBP12.1□□□□□ -0.47
PTPRF-201ENST00000359947 DAZAP2Q15038 168 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-201ENST00000359947 C19orf84I3L1E1 186 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 J3QQQ9 107 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 DEFB125Q8N687 156 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 UBL5Q9BZL1 73 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 TANC2Q9HCD6 1990 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 NCOA6Q14686 2063 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-201ENST00000359947 HIST2H2BDQ6DRA6 164 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 FGF23Q9GZV9 251 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-201ENST00000359947 UBE2AP49459 152 aa12.1□□□□□ -0.47
PTPRF-201ENST00000359947 DKK2Q9UBU2 259 aa12.09□□□□□ -0.47
PTPRF-201ENST00000359947 FANCD2OSQ96PS1 177 aa12.09□□□□□ -0.47
PTPRF-201ENST00000359947 COX7A2LO14548 114 aa12.09□□□□□ -0.47
PTPRF-201ENST00000359947 C4orf3Q8WVX3 66 aa12.09□□□□□ -0.47
PTPRF-201ENST00000359947 MRPL52Q86TS9 123 aaKnown RBP12.09□□□□□ -0.47
PTPRF-201ENST00000359947 Q8NA96 180 aa12.09□□□□□ -0.47
PTPRF-201ENST00000359947 LTAP01374 205 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 C4orf48Q5BLP8 95 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 PRORYQ9H606 182 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 PLXNB3Q9ULL4 1909 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 C8orf31Q8N9H6 132 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 TMEM131Q92545 1883 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 SLC25A29Q8N8R3 303 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 RNF138Q8WVD3 245 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 ACACBO00763 2458 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 K7EIM0 57 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 TRBV12-3P01733 135 aa12.08□□□□□ -0.48
PTPRF-201ENST00000359947 DSCAMO60469 2012 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 F8VRH5 84 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 MYCNOSP40205 109 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 Q0VG73 95 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 CTSGP08311 255 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 INAFM2P0DMQ5 153 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 C20orf78Q9BR46 151 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 K7ERJ3 54 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 KLK12Q9UKR0 248 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 I3L2K1 104 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 SORL1Q92673 2214 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 PRR14LQ5THK1 2151 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 Q8N1Y9 231 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 Q8N7P7 452 aa12.07□□□□□ -0.48
PTPRF-201ENST00000359947 IGLV11-55A0A075B6I3 123 aa12.06□□□□□ -0.48
PTPRF-201ENST00000359947 LRCOL1A6NCL2 159 aa12.06□□□□□ -0.48
PTPRF-201ENST00000359947 K7EN84 100 aa12.06□□□□□ -0.48
PTPRF-201ENST00000359947 DSCAML1Q8TD84 2053 aa12.06□□□□□ -0.48
PTPRF-201ENST00000359947 IGLV3-1P01715 115 aa12.06□□□□□ -0.48
PTPRF-201ENST00000359947 CFPP27918 469 aa12.05□□□□□ -0.48
PTPRF-201ENST00000359947 C16orf54Q6UWD8 224 aa12.05□□□□□ -0.48
PTPRF-201ENST00000359947 NCR3O14931 201 aa12.05□□□□□ -0.48
PTPRF-201ENST00000359947 CARD19Q96LW7 228 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 PRO1854Q9UHT4 67 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 RBAKDNA6NC62 111 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 FAM231DQ6ZW35 169 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 C11orf45Q8TAV5 145 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 RNF183Q96D59 192 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 POLR3KQ9Y2Y1 108 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-201ENST00000359947 DAZ2Q13117 558 aaKnown RBP12.04□□□□□ -0.48
PTPRF-201ENST00000359947 DAZ4Q86SG3 579 aaKnown RBP12.04□□□□□ -0.48
PTPRF-201ENST00000359947 Q8NFD4 153 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 DAZ3Q9NR90 486 aaKnown RBP12.04□□□□□ -0.48
PTPRF-201ENST00000359947 POU2AF1Q16633 256 aa12.04□□□□□ -0.48
PTPRF-201ENST00000359947 ZNF106Q9H2Y7 1883 aaKnown RBP12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRB2P02812 416 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-201ENST00000359947 PRR20EP86478 221 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms