RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RBAKDNA6NC62 111 aa15.27■□□□□ 0.03
CCDC88B-202ENST00000356786 C8orf31Q8N9H6 132 aa15.27■□□□□ 0.03
CCDC88B-202ENST00000356786 DSCAML1Q8TD84 2053 aa15.27■□□□□ 0.03
CCDC88B-202ENST00000356786 MUSTN1Q8IVN3 82 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 I3L2K1 104 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 SRSF2Q01130 221 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 A0A0J9YXV3 536 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 IGHV1-69P01742 117 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 SPRNQ5BIV9 151 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 F8WEM9 126 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 TCTEX1D4Q5JR98 221 aa15.26■□□□□ 0.03
CCDC88B-202ENST00000356786 ACYP1P07311 99 aa15.25■□□□□ 0.03
CCDC88B-202ENST00000356786 FAM215AQ9Y5M1 114 aa15.25■□□□□ 0.03
CCDC88B-202ENST00000356786 IGHV7-4-1A0A0J9YVY3 117 aa15.25■□□□□ 0.03
CCDC88B-202ENST00000356786 ODF3L1Q8IXM7 274 aa15.25■□□□□ 0.03
CCDC88B-202ENST00000356786 ODF1Q14990 250 aa15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 PRR30Q53SZ7 412 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 RBMY1FQ15415 496 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 PTH2Q96A98 100 aa15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 KMT2EQ8IZD2 1858 aa15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 MRPL53Q96EL3 112 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-202ENST00000356786 MRPL36Q9P0J6 103 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-202ENST00000356786 RBM3P98179 157 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-202ENST00000356786 FAM236AA0A1B0GUQ0 79 aa15.23■□□□□ 0.03
CCDC88B-202ENST00000356786 FAM236BA0A1B0GV22 79 aa15.23■□□□□ 0.03
CCDC88B-202ENST00000356786 OBSL1O75147 1896 aa15.23■□□□□ 0.03
CCDC88B-202ENST00000356786 LHBP01229 141 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 MRAPQ8TCY5 172 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 RITA1Q96K30 269 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 ZFP2Q6ZN57 461 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 YPEL4Q96NS1 127 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 IGKV2-29A2NJV5 120 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 SPANXCQ9NY87 97 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 TP73-AS1Q9UF72 201 aa15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 ANKHD1Q8IWZ3 2542 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-202ENST00000356786 DSCR8Q96T75 97 aa15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 CACNA1AO00555 2505 aa15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 RPL32P62910 135 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 C3orf56Q8N813 242 aa15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 IGFBPL1Q8WX77 278 aa15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 CSPG4Q6UVK1 2322 aa15.21■□□□□ 0.03
CCDC88B-202ENST00000356786 MSMBP08118 114 aa15.21■□□□□ 0.02
CCDC88B-202ENST00000356786 NOTCH2Q04721 2471 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 C19orf71A6NCJ1 209 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 E9PLD3 99 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 LOXL1Q08397 574 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 ZNF503Q96F45 646 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 ICOSQ9Y6W8 199 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 TRAV25A0A0B4J276 109 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 PRSS33Q8NF86 280 aa15.2■□□□□ 0.02
CCDC88B-202ENST00000356786 A0A1B0GXF2 115 aa15.19■□□□□ 0.02
CCDC88B-202ENST00000356786 E7EUB6 86 aa15.19■□□□□ 0.02
CCDC88B-202ENST00000356786 CTSGP08311 255 aa15.19■□□□□ 0.02
CCDC88B-202ENST00000356786 SUMO4Q6EEV6 95 aa15.19■□□□□ 0.02
CCDC88B-202ENST00000356786 TECTAO75443 2155 aa15.19■□□□□ 0.02
CCDC88B-202ENST00000356786 COL4A4P53420 1690 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 RPL39P62891 51 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 ZNF295-AS1Q8N0V1 137 aa15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 PRAC2D3DTV9 90 aa15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 IGLV2-8P01709 118 aa15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 GDF5OSQ5U4N7 250 aa15.18■□□□□ 0.02
CCDC88B-202ENST00000356786 CRYGCP07315 174 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 CTRLP40313 264 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 RBX1P62877 108 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 MUC6Q6W4X9 2439 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 IGLV11-55A0A075B6I3 123 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 IGFL3Q6UXB1 125 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 Q6ZPA2 131 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 ZNF561-AS1K7EIQ3 104 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 BUB3O43684 328 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 GNLYP22749 145 aa15.17■□□□□ 0.02
CCDC88B-202ENST00000356786 P0C879 139 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 BAALCQ8WXS3 180 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 HOXD3P31249 432 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 MYO18BQ8IUG5 2567 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 A0A1B0GX51 115 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 IGKV3D-7A0A0C4DH55 119 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 C11orf86A6NJI1 115 aa15.16■□□□□ 0.02
CCDC88B-202ENST00000356786 LINC01619G3V211 115 aa15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 LINC00322Q6ZN03 302 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 ORMDL1Q9P0S3 153 aa15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 TP53TG3Q9ULZ0 132 aa15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 PRR14LQ5THK1 2151 aa15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 LINC01356Q8N9X3 169 aa15.15■□□□□ 0.02
CCDC88B-202ENST00000356786 ATP6V0E2Q8NHE4 81 aa15.14■□□□□ 0.01
CCDC88B-202ENST00000356786 A0A0B4J2C4 111 aa15.14■□□□□ 0.01
CCDC88B-202ENST00000356786 ATOX1O00244 68 aa15.14■□□□□ 0.01
CCDC88B-202ENST00000356786 SLC25A29Q8N8R3 303 aa15.14■□□□□ 0.01
CCDC88B-202ENST00000356786 TNRC6AQ8NDV7 1962 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-202ENST00000356786 IGHV7-81A0A0B4J1V7 117 aa15.13■□□□□ 0.01
CCDC88B-202ENST00000356786 DAND5Q8N907 189 aa15.13■□□□□ 0.01
CCDC88B-202ENST00000356786 PTPN13Q12923 2485 aa15.13■□□□□ 0.01
CCDC88B-202ENST00000356786 TRBV10-2A0A0K0K1G8 114 aa15.13■□□□□ 0.01
CCDC88B-202ENST00000356786 COL4A3Q01955 1670 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 TOMM6Q96B49 74 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 RNF183Q96D59 192 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 PROP1O75360 226 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 PIP4P1Q86T03 277 aa15.12■□□□□ 0.01
CCDC88B-202ENST00000356786 TMEM258P61165 79 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms