RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SORL1Q92673 2214 aa14.55□□□□□ -0.08
COL9A3-201ENST00000343916 OR1N2Q8NGR9 330 aa14.55□□□□□ -0.08
COL9A3-201ENST00000343916 DPF1Q92782 380 aa14.55□□□□□ -0.08
COL9A3-201ENST00000343916 AP1S3Q96PC3 154 aa14.55□□□□□ -0.08
COL9A3-201ENST00000343916 SAP30O75446 220 aa14.55□□□□□ -0.08
COL9A3-201ENST00000343916 K7EMT4 169 aa14.54□□□□□ -0.08
COL9A3-201ENST00000343916 SMIM17P0DL12 118 aa14.54□□□□□ -0.08
COL9A3-201ENST00000343916 CHD6Q8TD26 2715 aa14.54□□□□□ -0.08
COL9A3-201ENST00000343916 A6NDN8 102 aa14.54□□□□□ -0.08
COL9A3-201ENST00000343916 RNASE3P12724 160 aaKnown RBP14.54□□□□□ -0.08
COL9A3-201ENST00000343916 ODF1Q14990 250 aa14.54□□□□□ -0.08
COL9A3-201ENST00000343916 C9orf118A6NHY6 69 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 CREBBPQ92793 2442 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 MUC4Q99102 2169 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 H3BRM9 83 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 LAGE3Q14657 143 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 APRG1Q8IVJ8 170 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 FOXC2Q99958 501 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 ZNF580Q9UK33 172 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 TEX15Q9BXT5 2789 aa14.53□□□□□ -0.08
COL9A3-201ENST00000343916 ZNF688P0C7X2 276 aa14.52□□□□□ -0.08
COL9A3-201ENST00000343916 UFSP1Q6NVU6 142 aa14.52□□□□□ -0.08
COL9A3-201ENST00000343916 ADAMTSL5Q6ZMM2 481 aa14.52□□□□□ -0.08
COL9A3-201ENST00000343916 RPL39LQ96EH5 51 aaKnown RBP14.52□□□□□ -0.08
COL9A3-201ENST00000343916 DUX5Q96PT3 197 aa14.52□□□□□ -0.08
COL9A3-201ENST00000343916 J3QLI3 93 aa14.52□□□□□ -0.09
COL9A3-201ENST00000343916 K7ERU9 68 aa14.52□□□□□ -0.09
COL9A3-201ENST00000343916 HSD52Q0P140 79 aa14.52□□□□□ -0.09
COL9A3-201ENST00000343916 AGRNO00468 2067 aa14.52□□□□□ -0.09
COL9A3-201ENST00000343916 ZNF469Q96JG9 3925 aaPredicted RBP14.51□□□□□ -0.09
COL9A3-201ENST00000343916 PRSS47A8MTI9 375 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 MGPP08493 103 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 RASL10AQ92737 203 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 MRAP2Q96G30 205 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 BEX4Q9NWD9 120 aaPredicted RBP14.51□□□□□ -0.09
COL9A3-201ENST00000343916 VPREB3Q9UKI3 123 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 ID1P41134 155 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 SYNJ2BPP57105 145 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 GTF2H5Q6ZYL4 71 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 OR9G4Q8NGQ1 327 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 CR1P17927 2039 aa14.51□□□□□ -0.09
COL9A3-201ENST00000343916 IGKV3-20P01619 116 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 PSMG4Q5JS54 123 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 DPH3P1Q9H4G8 78 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 KLLNB2CW77 178 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 IGHV4-31P0DP07 118 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 SMIM2Q9BVW6 85 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 HHLA3Q9XRX5 114 aa14.5□□□□□ -0.09
COL9A3-201ENST00000343916 TLN2Q9Y4G6 2542 aa14.49□□□□□ -0.09
COL9A3-201ENST00000343916 TRAV12-3A0A0B4J271 114 aa14.49□□□□□ -0.09
COL9A3-201ENST00000343916 TTTY13Q9BZ97 58 aa14.49□□□□□ -0.09
COL9A3-201ENST00000343916 KMT2BQ9UMN6 2715 aaPredicted RBP14.49□□□□□ -0.09
COL9A3-201ENST00000343916 IGKV2D-26A0A0A0MRZ7 120 aa14.49□□□□□ -0.09
COL9A3-201ENST00000343916 HOXA3O43365 443 aaPredicted RBP14.49□□□□□ -0.09
COL9A3-201ENST00000343916 IGHV4OR15-8A0A075B7B6 117 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 A0A087WW49 117 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 TRBV7-9A0A0J9YWB2 115 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 K7EP34 96 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 SUMO2P61956 95 aaKnown RBP14.48□□□□□ -0.09
COL9A3-201ENST00000343916 ZMAT4Q9H898 229 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 MYOZ3Q8TDC0 251 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 ZNF702PQ9H963 129 aa14.48□□□□□ -0.09
COL9A3-201ENST00000343916 TRAV12-2A0A075B6T6 113 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 IGKCP01834 107 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 RIPPLY3P57055 190 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 FAM159AQ6UWV7 190 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 Q6YL49 198 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 JPT2Q9H910 190 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 SIVA1O15304 175 aa14.47□□□□□ -0.09
COL9A3-201ENST00000343916 TMEM160Q9NX00 188 aa14.46□□□□□ -0.09
COL9A3-201ENST00000343916 MRPL35Q9NZE8 188 aaKnown RBP14.46□□□□□ -0.09
COL9A3-201ENST00000343916 ATP5LO75964 103 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 FSHBP01225 129 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 CD7P09564 240 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 MED14OSP0DP75 135 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 GTSCR1Q86UQ5 136 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 CSTL1Q9H114 145 aa14.46□□□□□ -0.1
COL9A3-201ENST00000343916 MYO9AB2RTY4 2548 aa14.45□□□□□ -0.1
COL9A3-201ENST00000343916 Q5PR19 223 aa14.45□□□□□ -0.1
COL9A3-201ENST00000343916 DEFB104AQ8WTQ1 72 aa14.45□□□□□ -0.1
COL9A3-201ENST00000343916 TMEM89A2RUT3 159 aa14.44□□□□□ -0.1
COL9A3-201ENST00000343916 LGALS1P09382 135 aaKnown RBP14.44□□□□□ -0.1
COL9A3-201ENST00000343916 HOXD3P31249 432 aaPredicted RBP14.44□□□□□ -0.1
COL9A3-201ENST00000343916 ZC2HC1BQ5TFG8 222 aa14.44□□□□□ -0.1
COL9A3-201ENST00000343916 GCSHP23434 173 aa14.44□□□□□ -0.1
COL9A3-201ENST00000343916 C18orf65Q6ZTR6 163 aa14.44□□□□□ -0.1
COL9A3-201ENST00000343916 SPCS1Q9Y6A9 102 aa14.44□□□□□ -0.1
COL9A3-201ENST00000343916 NBPF19A0A087WUL8 3843 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 A0A1W2PPM0 123 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 DPM2O94777 84 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 SNRPD3P62318 126 aaKnown RBP14.43□□□□□ -0.1
COL9A3-201ENST00000343916 DEFB136Q30KP8 78 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 NEGR1Q7Z3B1 354 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 TENM4Q6N022 2769 aa14.43□□□□□ -0.1
COL9A3-201ENST00000343916 A0A087WWL8 130 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 A0A0J9YX75 114 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 K7EQG2 157 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 FXYD2P54710 66 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 DEFB113Q30KQ7 82 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 ELANEP08246 267 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms