RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 TMEM97Q5BJF2 176 aa11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 RNASE3P12724 160 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 MYOZ3Q8TDC0 251 aa11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 DCANP1Q8TF63 244 aa11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 MRAP2Q96G30 205 aa11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 TMEM160Q9NX00 188 aa11.19□□□□□ -0.62
VIPAS39-202ENST00000343765 A0A096LNT2 108 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 IGKV2D-26A0A0A0MRZ7 120 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 ID1P41134 155 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 PSMG4Q5JS54 123 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 GTSCR1Q86UQ5 136 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 DEFB104AQ8WTQ1 72 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 RASL10AQ92737 203 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 SMIM2Q9BVW6 85 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 DPH3P1Q9H4G8 78 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 ACANP16112 2415 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 NIPBLQ6KC79 2804 aaeCLIP11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 TRAV12-3A0A0B4J271 114 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 IGKCP01834 107 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 SYNJ2BPP57105 145 aa11.18□□□□□ -0.62
VIPAS39-202ENST00000343765 SRSF1Q07955 248 aaKnown RBP eCLIP11.17□□□□□ -0.62
VIPAS39-202ENST00000343765 PRRC2AP48634 2157 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-202ENST00000343765 K7EMT4 169 aa11.17□□□□□ -0.62
VIPAS39-202ENST00000343765 MRPL35Q9NZE8 188 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-202ENST00000343765 ATP5LO75964 103 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 SUMO2P61956 95 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 BEX4Q9NWD9 120 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 HHLA3Q9XRX5 114 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 TRAV12-2A0A075B6T6 113 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 DPM2O94777 84 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 ZC2HC1BQ5TFG8 222 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 FAM159AQ6UWV7 190 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 NEGR1Q7Z3B1 354 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 JPT2Q9H910 190 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 APRG1Q8IVJ8 170 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 AP1S3Q96PC3 154 aa11.16□□□□□ -0.62
VIPAS39-202ENST00000343765 CD7P09564 240 aa11.15□□□□□ -0.62
VIPAS39-202ENST00000343765 OR4C5Q8NGB2 326 aa11.15□□□□□ -0.62
VIPAS39-202ENST00000343765 ZMAT4Q9H898 229 aa11.15□□□□□ -0.62
VIPAS39-202ENST00000343765 PRSS47A8MTI9 375 aa11.15□□□□□ -0.63
VIPAS39-202ENST00000343765 KLLNB2CW77 178 aa11.15□□□□□ -0.63
VIPAS39-202ENST00000343765 AMMECR1LQ6DCA0 310 aa11.15□□□□□ -0.63
VIPAS39-202ENST00000343765 VPREB3Q9UKI3 123 aa11.15□□□□□ -0.63
VIPAS39-202ENST00000343765 MUC4Q99102 2169 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 IGHV4OR15-8A0A075B7B6 117 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 A0A087WW49 117 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 OR9G4Q8NGQ1 327 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 NAA38Q9BRA0 125 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 AGRNO00468 2067 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 A0A087WWL8 130 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 J3QLI3 93 aa11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 HOXA3O43365 443 aaPredicted RBP11.14□□□□□ -0.63
VIPAS39-202ENST00000343765 ITPR3Q14573 2671 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 TRAV8-6A0A0B4J262 113 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 IGHV4-31P0DP07 118 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 HSD52Q0P140 79 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 ADAMTSL5Q6ZMM2 481 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 SCGB3A1Q96QR1 104 aa11.13□□□□□ -0.63
VIPAS39-202ENST00000343765 SEC11AP67812 179 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 HIST2H2BCQ6DN03 193 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 MTORP42345 2549 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 TRBV7-9A0A0J9YWB2 115 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 MED14OSP0DP75 135 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 SNRPD3P62318 126 aaKnown RBP11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 DEFB136Q30KP8 78 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 CSTL1Q9H114 145 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 ZNF702PQ9H963 129 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 ZNF580Q9UK33 172 aa11.12□□□□□ -0.63
VIPAS39-202ENST00000343765 AKAP9Q99996 3911 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 HOXD3P31249 432 aaPredicted RBP11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 SPINK13Q1W4C9 94 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 ORMDL2Q53FV1 153 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 FAM74A4Q5TZK3 123 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 RAB37Q96AX2 223 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 FLNAP21333 2647 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 ITPR2Q14571 2701 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 A0A087WX48 190 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 F5H697 171 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 K7EP13 123 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 LGALS1P09382 135 aaKnown RBP11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 C18orf65Q6ZTR6 163 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 ZNF843Q8N446 348 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 C20orf78Q9BR46 151 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 WNK1Q9H4A3 2382 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 Q6YL49 198 aa11.11□□□□□ -0.63
VIPAS39-202ENST00000343765 A0A0J9YX75 114 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 Q5PR19 223 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 MDFICQ9P1T7 246 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 A6NDN8 102 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 SIVA1O15304 175 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 GCSHP23434 173 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 C2orf66Q6UXQ4 117 aa11.1□□□□□ -0.63
VIPAS39-202ENST00000343765 K7EQG2 157 aa11.09□□□□□ -0.63
VIPAS39-202ENST00000343765 SAMD13Q5VXD3 122 aa11.09□□□□□ -0.63
VIPAS39-202ENST00000343765 TOMM6Q96B49 74 aa11.09□□□□□ -0.63
VIPAS39-202ENST00000343765 DUX3Q96PT4 197 aa11.09□□□□□ -0.63
VIPAS39-202ENST00000343765 KIF25-AS1Q9Y6Z4 181 aa11.09□□□□□ -0.63
VIPAS39-202ENST00000343765 NOTCH3Q9UM47 2321 aa11.08□□□□□ -0.64
VIPAS39-202ENST00000343765 NXPH4O95158 308 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms