RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RNASE6Q93091 150 aaKnown RBP3.09□□□□□ -1.91
NEDD4-201ENST00000338963 TRPM7Q96QT4 1865 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 E7EQL1 145 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 IGFL2Q6UWQ7 119 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 ENHOQ6UWT2 76 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 MPLKIPQ8TAP9 179 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 TMEM254Q8TBM7 123 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 C17orf77Q96MU5 243 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 LINC00846Q9NV44 126 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 IGKV2-40A0A087WW87 121 aaPredicted RBP3.09□□□□□ -1.92
NEDD4-201ENST00000338963 A0A096LPE4 126 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 A0A1W2PPZ6 126 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 IGKV2D-40P01614 121 aaPredicted RBP3.09□□□□□ -1.92
NEDD4-201ENST00000338963 PROK2Q9HC23 129 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 CTSZQ9UBR2 303 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 CGB3P0DN86 165 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 CGB7P0DN87 165 aa3.09□□□□□ -1.92
NEDD4-201ENST00000338963 MYLKQ15746 1914 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 LITAFQ99732 161 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 TMEM256-PLSCR3K7ERE1 68 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 ADORA2A-AS1P86434 159 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 Q6ZS52 159 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 RMI2Q96E14 147 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 TP53BP1Q12888 1972 aaPredicted RBP3.08□□□□□ -1.92
NEDD4-201ENST00000338963 PRYO14603 147 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 POLR2KP53803 58 aaKnown RBP3.08□□□□□ -1.92
NEDD4-201ENST00000338963 RPL11P62913 178 aaKnown RBP3.08□□□□□ -1.92
NEDD4-201ENST00000338963 C7orf65Q6ZTY9 151 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 IGHV3-20A0A0C4DH32 117 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 HCP5Q6MZN7 132 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 LIMD2Q9BT23 127 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 TRIP11Q15643 1979 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 ZFAND3Q9H8U3 227 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 COL4A2P08572 1712 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 SBF1O95248 1867 aa3.08□□□□□ -1.92
NEDD4-201ENST00000338963 ZNF73O43830 326 aaPredicted RBP3.07□□□□□ -1.92
NEDD4-201ENST00000338963 I3L2K1 104 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 RNASE4P34096 147 aaKnown RBP3.07□□□□□ -1.92
NEDD4-201ENST00000338963 A0A0J9YXV3 536 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 EIF4EBP3O60516 100 aaPredicted RBP3.07□□□□□ -1.92
NEDD4-201ENST00000338963 Q8N6K4 173 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 NDUFB1O75438 58 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 C9orf47Q6ZRZ4 202 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 NKAPP1Q8N9T2 125 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 NREPQ16612 68 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 C17orf58Q2M2W7 97 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 CYSTM1Q9H1C7 97 aa3.07□□□□□ -1.92
NEDD4-201ENST00000338963 PHF5AQ7RTV0 110 aaKnown RBP3.07□□□□□ -1.92
NEDD4-201ENST00000338963 TRGV3P03979 118 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 B3GALT5-AS1P59052 145 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 XIRP1Q702N8 1843 aaKnown RBP3.06□□□□□ -1.92
NEDD4-201ENST00000338963 M0R378 163 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 IGLV2-23P01705 113 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 RSPO4Q2I0M5 234 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-201ENST00000338963 IGHV5-10-1A0A0J9YXX1 117 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 IGKV1-17P01599 117 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 MRPS21P82921 87 aaKnown RBP3.06□□□□□ -1.92
NEDD4-201ENST00000338963 CCL14Q16627 93 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 UBE2E2Q96LR5 201 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 OPRPNQ99935 248 aaPredicted RBP3.06□□□□□ -1.92
NEDD4-201ENST00000338963 ADARB2-AS1A8MUL3 147 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 TSHBP01222 138 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 C19orf54Q5BKX5 351 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 Q8TAT8 98 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 IGKV3D-20A0A0C4DH25 116 aa3.06□□□□□ -1.92
NEDD4-201ENST00000338963 IGKV1D-17A0A075B6S4 117 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 IGHV7-4-1A0A0J9YVY3 117 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 E7EUB6 86 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 AVPP01185 164 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 PIK3CD-AS1Q5SR53 167 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 KIAA1217Q5T5P2 1943 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 GGNQ86UU5 652 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 PATE1Q8WXA2 126 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 ALPK3Q96L96 1907 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 SMCHD1A6NHR9 2005 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 FOLR3P41439 243 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LINC00205P59089 165 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 FAM74A4Q5TZK3 123 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 FAM19A3Q7Z5A8 133 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 RPP25Q9BUL9 199 aaKnown RBP3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LINC00474Q9P2X8 69 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LINC00588Q9Y4M8 146 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 PLXNA4Q9HCM2 1894 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LOC110117498A0A087WWA1 95 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 A0A087X002 238 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LOC100131303A0A0U1RQF7 123 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 H3BS24 57 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 SS18Q15532 418 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 PAPPA2Q9BXP8 1791 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 IGHV1-3A0A0C4DH29 117 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 IGKV1-16P04430 117 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 CCL3P10147 92 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 HAMPP81172 84 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 SOSTDC1Q6X4U4 206 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 C17orf82Q86X59 251 aaPredicted RBP3.05□□□□□ -1.92
NEDD4-201ENST00000338963 SNURFQ9Y675 71 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 ASB16-AS1Q495Z4 193 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 LINC00269Q8N2A0 174 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 SMAD5-AS1Q9Y6J3 95 aa3.05□□□□□ -1.92
NEDD4-201ENST00000338963 COL4A6Q14031 1691 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms