RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CD7P09564 240 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 UBE2D3P61077 147 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 UBE2D2P62837 147 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 NEXN-AS1Q8NBZ9 246 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 IGF1P05019 195 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 CTSGP08311 255 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 CELSR1Q9NYQ6 3014 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 IGLV11-55A0A075B6I3 123 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 CRLF1O75462 422 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 ZNF688P0C7X2 276 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 SCGB1C2P0DMR2 95 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 NDUFV3P56181 108 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 BAALCQ8WXS3 180 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 FLNCQ14315 2725 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 EPG5Q9HCE0 2579 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 H7C2G1 150 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 M0R381 172 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 ZNF672Q499Z4 452 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 TRPT1Q86TN4 253 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 NDUFA11Q86Y39 141 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 NUP37Q8NFH4 326 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 RAX2Q96IS3 184 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 SMIM2Q9BVW6 85 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 RAB1BQ9H0U4 201 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 NBR2O15453 112 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 RNASE6Q93091 150 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 DYNLRB1Q9NP97 96 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 MSRB2Q9Y3D2 182 aa10.29□□□□□ -0.76
CCDC88C-201ENST00000331194 FAM159AQ6UWV7 190 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 VPREB3Q9UKI3 123 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 ANKHD1Q8IWZ3 2542 aaKnown RBP10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 A8MWV9 139 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 CFC1BP0CG36 223 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 CFC1P0CG37 223 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 GAGE2BQ13066 116 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 GAGE2EQ4V326 116 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 TTC32Q5I0X7 151 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 GAGE2DQ9UEU5 116 aa10.28□□□□□ -0.76
CCDC88C-201ENST00000331194 MYO18BQ8IUG5 2567 aa10.27□□□□□ -0.76
CCDC88C-201ENST00000331194 TRAV4A0A0B4J268 109 aa10.27□□□□□ -0.76
CCDC88C-201ENST00000331194 TRAV12-1A0A0B4J245 112 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 COX6B1P14854 86 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 DEFB1P60022 68 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 C2orf66Q6UXQ4 117 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 PRR9Q5T870 116 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 IGFL2Q6UWQ7 119 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 C14orf178Q8N769 122 aaPredicted RBP10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 OR11H6Q8NGC7 330 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 TOMM6Q96B49 74 aa10.27□□□□□ -0.77
CCDC88C-201ENST00000331194 LINC01619G3V211 115 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 LY6LH3BQJ8 138 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 TSPEAR-AS2P59090 65 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 KAAG1Q9UBP8 84 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 C11orf86A6NJI1 115 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 C9JAW5 83 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 DUSP14O95147 198 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 SRSF2Q01130 221 aaKnown RBP10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 Q6ZS92 163 aa10.26□□□□□ -0.77
CCDC88C-201ENST00000331194 TRAV8-2A0A0B4J237 113 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 LY6HO94772 140 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 SUMO2P61956 95 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 A0A0J9YY99 117 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 CRYGDP07320 174 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 MGPP08493 103 aa10.25□□□□□ -0.77
CCDC88C-201ENST00000331194 RHODO00212 210 aa10.24□□□□□ -0.77
CCDC88C-201ENST00000331194 SNCGO76070 127 aa10.24□□□□□ -0.77
CCDC88C-201ENST00000331194 ELANEP08246 267 aa10.24□□□□□ -0.77
CCDC88C-201ENST00000331194 MEIG1Q5JSS6 88 aa10.24□□□□□ -0.77
CCDC88C-201ENST00000331194 IFITM1P13164 125 aa10.24□□□□□ -0.77
CCDC88C-201ENST00000331194 HIVEP3Q5T1R4 2406 aa10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 E7EQL1 145 aa10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 EIF4EBP3O60516 100 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 PF4V1P10720 104 aa10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 SLC25A20O43772 301 aa10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 TMEM190Q8WZ59 177 aa10.23□□□□□ -0.77
CCDC88C-201ENST00000331194 RNF223E7ERA6 249 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 BUB3O43684 328 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 TSHBP01222 138 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 IGHV3-30P01768 117 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 IGHV3-30-5P0DP03 117 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 ORMDL2Q53FV1 153 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 A0A0G2JNJ9 132 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 RPL39P62891 51 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 Q9UFV3 132 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 SRD5A1P18405 259 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 SBSPONQ8IVN8 264 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 C10orf126Q8N4M7 172 aa10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 HRNRQ86YZ3 2850 aaPredicted RBP10.22□□□□□ -0.77
CCDC88C-201ENST00000331194 NTN5Q8WTR8 489 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-201ENST00000331194 BEX4Q9NWD9 120 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-201ENST00000331194 IGLV4-69A0A075B6H9 119 aa10.21□□□□□ -0.78
CCDC88C-201ENST00000331194 TMEM170BQ5T4T1 132 aa10.21□□□□□ -0.78
CCDC88C-201ENST00000331194 DPM3Q9P2X0 92 aa10.21□□□□□ -0.78
CCDC88C-201ENST00000331194 IGHV3-64A0A075B6Q5 118 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 C15orf32Q32M92 178 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 PRO1854Q9UHT4 67 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 TEX49A0A1B0GTD5 131 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 RNF5Q99942 180 aa10.2□□□□□ -0.78
CCDC88C-201ENST00000331194 SLC50A1Q9BRV3 221 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms