RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RSPO4Q2I0M5 234 aaPredicted RBP11.36□□□□□ -0.59
COL7A1-201ENST00000328333 ATP1A1-AS1Q5TC04 95 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 VOPP1Q96AW1 172 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 CRYGBP07316 175 aa11.36□□□□□ -0.59
COL7A1-201ENST00000328333 RPL35AP18077 110 aaKnown RBP11.36□□□□□ -0.59
COL7A1-201ENST00000328333 MBD3L4A6NDZ8 208 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 MBD3L3A6NE82 208 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 MBD3L5A6NJ08 208 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 MBD3L2Q8NHZ7 208 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 COL4A1P02462 1669 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 RAI1Q7Z5J4 1906 aaPredicted RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 IGHV3-53P01767 116 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 ANKRD17O75179 2603 aaKnown RBP11.35□□□□□ -0.59
COL7A1-201ENST00000328333 A0A0G2JRQ6 117 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 PCP2Q8IVA1 136 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 F5H768 121 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 HIGD2BQ4VC39 106 aa11.35□□□□□ -0.59
COL7A1-201ENST00000328333 C22orf46C9J442 243 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 SPINK13Q1W4C9 94 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 COL5A1P20908 1838 aaPredicted RBP11.34□□□□□ -0.59
COL7A1-201ENST00000328333 TRAV26-2A0A0B4J265 109 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 ZNF726P1Q15940 193 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 LINC01619G3V211 115 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 TRBV10-2A0A0K0K1G8 114 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 WFDC12Q8WWY7 111 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 NSUN5P1Q3KNT7 163 aa11.34□□□□□ -0.59
COL7A1-201ENST00000328333 FAM240AA0A1B0GVK7 77 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 Q6ZUT4 128 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 LYRM9A8MSI8 78 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 ETV2O00321 342 aaPredicted RBP11.33□□□□□ -0.6
COL7A1-201ENST00000328333 SND1-IT1Q9HBX3 110 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 IGKV1-6A0A0C4DH72 117 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 BAALCQ8WXS3 180 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 PRR15LQ9BU68 103 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 IMUPQ9GZP8 106 aa11.33□□□□□ -0.6
COL7A1-201ENST00000328333 CD59P13987 128 aa11.32□□□□□ -0.6
COL7A1-201ENST00000328333 SLX1AQ9BQ83 275 aa11.32□□□□□ -0.6
COL7A1-201ENST00000328333 K7EN84 100 aa11.32□□□□□ -0.6
COL7A1-201ENST00000328333 K7ERS5 55 aa11.32□□□□□ -0.6
COL7A1-201ENST00000328333 IGHV7-4-1A0A0J9YVY3 117 aa11.32□□□□□ -0.6
COL7A1-201ENST00000328333 Q8N1Y9 231 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 MRPL36Q9P0J6 103 aaKnown RBP11.31□□□□□ -0.6
COL7A1-201ENST00000328333 ANKRD11Q6UB99 2663 aaPredicted RBP11.31□□□□□ -0.6
COL7A1-201ENST00000328333 J3QLI3 93 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 ANGP03950 147 aaKnown RBP11.31□□□□□ -0.6
COL7A1-201ENST00000328333 TIMM17AQ99595 171 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 TEX36Q5VZQ5 186 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 ZNRF2Q8NHG8 242 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 CSRP1P21291 193 aaKnown RBP11.31□□□□□ -0.6
COL7A1-201ENST00000328333 ATP6V0E1O15342 81 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 MTORP42345 2549 aa11.31□□□□□ -0.6
COL7A1-201ENST00000328333 TRAV26-1A0A087WT03 109 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 DUX4L9Q6RFH8 374 aaPredicted RBP11.3□□□□□ -0.6
COL7A1-201ENST00000328333 RNASE8Q8TDE3 154 aaKnown RBP11.3□□□□□ -0.6
COL7A1-201ENST00000328333 ETDCA0A1B0GVM5 59 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 NDUFC2-KCTD14E9PQ53 114 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 C10orf105Q8TEF2 133 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 DEFB131AP59861 70 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 CLPSL1A2RUU4 121 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 SPTBN4Q9H254 2564 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 C11orf86A6NJI1 115 aa11.3□□□□□ -0.6
COL7A1-201ENST00000328333 WT1-ASQ06250 92 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 SPATA12Q7Z6I5 190 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 POLQO75417 2590 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 A4D1N5 150 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 IGHV1-58A0A0C4DH39 117 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 CTRLP40313 264 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 C14orf132Q9NPU4 83 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 LTBRP36941 435 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 E9PLD3 99 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 IGHV1-69P01742 117 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 ANXA2RQ3ZCQ2 193 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 COX7B2Q8TF08 81 aa11.29□□□□□ -0.6
COL7A1-201ENST00000328333 TOMM6Q96B49 74 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 UBE2E2Q96LR5 201 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 CLPSP04118 112 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 PRR20EP86478 221 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 PRR20CP86479 221 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 PRR20DP86480 221 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 PRR20BP86481 221 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 PRR20AP86496 221 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 NXPH4O95158 308 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 MDS2Q8NDY4 140 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 KLK9Q9UKQ9 250 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 MED14OSP0DP75 135 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 TRBV12-3P01733 135 aa11.28□□□□□ -0.6
COL7A1-201ENST00000328333 FOXE3Q13461 319 aa11.27□□□□□ -0.61
COL7A1-201ENST00000328333 KAAG1Q9UBP8 84 aa11.27□□□□□ -0.61
COL7A1-201ENST00000328333 FAM236DA0A1B0GTK5 79 aa11.27□□□□□ -0.61
COL7A1-201ENST00000328333 FAM236CP0DP71 79 aa11.27□□□□□ -0.61
COL7A1-201ENST00000328333 C1orf147Q96MC9 270 aaPredicted RBP11.27□□□□□ -0.61
COL7A1-201ENST00000328333 XCL2Q9UBD3 114 aa11.27□□□□□ -0.61
COL7A1-201ENST00000328333 TMEM61Q8N0U2 210 aa11.26□□□□□ -0.61
COL7A1-201ENST00000328333 TFF1P04155 84 aa11.26□□□□□ -0.61
COL7A1-201ENST00000328333 PRR31Q5SQ13 230 aa11.26□□□□□ -0.61
COL7A1-201ENST00000328333 FAM120AOSQ5T036 256 aa11.26□□□□□ -0.61
COL7A1-201ENST00000328333 C3orf22Q8N5N4 141 aa11.26□□□□□ -0.61
COL7A1-201ENST00000328333 COX7A2LO14548 114 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 XCL1P47992 114 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 PRB3Q04118 309 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms