RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 IGKV1OR2-108A0A075B7D4 117 aa14.41□□□□□ -0.1
PCDH1-201ENST00000287008 PRSS29PA6NIE9 313 aa14.41□□□□□ -0.1
PCDH1-201ENST00000287008 SIGLEC8Q9NYZ4 499 aa14.41□□□□□ -0.1
PCDH1-201ENST00000287008 ANKRD11Q6UB99 2663 aaPredicted RBP14.4□□□□□ -0.1
PCDH1-201ENST00000287008 H3BMM0 161 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 GPHB5Q86YW7 130 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 UBE2WQ96B02 151 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 CRYGCP07315 174 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 MRPL23Q16540 153 aaKnown RBP14.4□□□□□ -0.1
PCDH1-201ENST00000287008 CLPSL2Q6UWE3 100 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 C2orf82Q6UX34 121 aa14.4□□□□□ -0.1
PCDH1-201ENST00000287008 TNFRSF13BO14836 293 aaPredicted RBP14.4□□□□□ -0.1
PCDH1-201ENST00000287008 TRAV8-4A0A0B4J246 113 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 CCL18P55774 89 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 HERVK_113P63121 156 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 NCKAP5O14513 1909 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 TRAV25A0A0B4J276 109 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 CITED2Q99967 270 aaPredicted RBP14.39□□□□□ -0.11
PCDH1-201ENST00000287008 TRAV8-3A0A0A6YYJ7 113 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 CFHR4Q92496 578 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 C16orf74Q96GX8 76 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 C1orf43Q9BWL3 253 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 Q9HAA7 133 aa14.39□□□□□ -0.11
PCDH1-201ENST00000287008 TMEM126AQ9H061 195 aa14.38□□□□□ -0.11
PCDH1-201ENST00000287008 F8VRH5 84 aa14.38□□□□□ -0.11
PCDH1-201ENST00000287008 PLXNB3Q9ULL4 1909 aa14.38□□□□□ -0.11
PCDH1-201ENST00000287008 USP9YO00507 2555 aaPredicted RBP14.37□□□□□ -0.11
PCDH1-201ENST00000287008 ADAMTSL5Q6ZMM2 481 aa14.37□□□□□ -0.11
PCDH1-201ENST00000287008 SMAD5-AS1Q9Y6J3 95 aa14.37□□□□□ -0.11
PCDH1-201ENST00000287008 SETD2Q9BYW2 2564 aaPredicted RBP14.37□□□□□ -0.11
PCDH1-201ENST00000287008 MED12LQ86YW9 2145 aa14.37□□□□□ -0.11
PCDH1-201ENST00000287008 SNHG12Q9BXW3 62 aa14.37□□□□□ -0.11
PCDH1-201ENST00000287008 TEX22C9J3V5 150 aa14.37□□□□□ -0.11
PCDH1-201ENST00000287008 MRPL35Q9NZE8 188 aaKnown RBP14.37□□□□□ -0.11
PCDH1-201ENST00000287008 PRRC2AP48634 2157 aaKnown RBP14.36□□□□□ -0.11
PCDH1-201ENST00000287008 A6NDX4 124 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 DNAJC9-AS1A6NH13 148 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 KIR3DS1Q14943 382 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 WFDC11Q8NEX6 87 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 SPTBN4Q9H254 2564 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 INSL3P51460 131 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 WDR87Q6ZQQ6 2873 aa14.36□□□□□ -0.11
PCDH1-201ENST00000287008 PATE2Q6UY27 113 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 GYPEP15421 78 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 ASPHD1Q5U4P2 390 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 XCL1P47992 114 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 SH2D6Q7Z4S9 175 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 ZNF843Q8N446 348 aa14.35□□□□□ -0.11
PCDH1-201ENST00000287008 ICOSQ9Y6W8 199 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 Q6ZQT7 251 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 ATP6V0E2Q8NHE4 81 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 ZNF48Q96MX3 618 aaPredicted RBP14.34□□□□□ -0.11
PCDH1-201ENST00000287008 SPRY2O43597 315 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 LGALS9BQ3B8N2 356 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 RNASE13Q5GAN3 156 aaKnown RBP14.34□□□□□ -0.11
PCDH1-201ENST00000287008 LGALS9CQ6DKI2 356 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 ODF3L1Q8IXM7 274 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 TMEM61Q8N0U2 210 aa14.34□□□□□ -0.11
PCDH1-201ENST00000287008 C4orf3Q8WVX3 66 aa14.33□□□□□ -0.12
PCDH1-201ENST00000287008 DEFB135Q30KP9 77 aa14.32□□□□□ -0.12
PCDH1-201ENST00000287008 NDUFS6O75380 124 aaKnown RBP14.32□□□□□ -0.12
PCDH1-201ENST00000287008 K7EMI3 77 aa14.31□□□□□ -0.12
PCDH1-201ENST00000287008 FN1P02751 2386 aaKnown RBP14.31□□□□□ -0.12
PCDH1-201ENST00000287008 MORN5Q5VZ52 161 aa14.31□□□□□ -0.12
PCDH1-201ENST00000287008 C22orf34Q6ZV56 151 aa14.31□□□□□ -0.12
PCDH1-201ENST00000287008 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.3□□□□□ -0.12
PCDH1-201ENST00000287008 IGKV2-29A2NJV5 120 aaPredicted RBP14.3□□□□□ -0.12
PCDH1-201ENST00000287008 J3QQQ9 107 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 K7EN84 100 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 UBE2BP63146 152 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 PLXNB1O43157 2135 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 ZNF664Q8N3J9 261 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 WI2-2373I1.2A0A1W2PRP0 233 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 ESM1Q9NQ30 184 aa14.3□□□□□ -0.12
PCDH1-201ENST00000287008 C9JAW5 83 aa14.29□□□□□ -0.12
PCDH1-201ENST00000287008 CD5LO43866 347 aa14.29□□□□□ -0.12
PCDH1-201ENST00000287008 FANCD2OSQ96PS1 177 aa14.29□□□□□ -0.12
PCDH1-201ENST00000287008 E7EUB6 86 aa14.29□□□□□ -0.12
PCDH1-201ENST00000287008 HIST1H4AP62805 103 aaKnown RBP14.29□□□□□ -0.12
PCDH1-201ENST00000287008 IGHV4-31P0DP07 118 aa14.29□□□□□ -0.12
PCDH1-201ENST00000287008 EDA2RQ9HAV5 297 aa14.28□□□□□ -0.12
PCDH1-201ENST00000287008 SPINK8P0C7L1 97 aa14.28□□□□□ -0.12
PCDH1-201ENST00000287008 SCRT2Q9NQ03 307 aa14.28□□□□□ -0.12
PCDH1-201ENST00000287008 SPANXA1Q9NS26 97 aa14.28□□□□□ -0.12
PCDH1-201ENST00000287008 CRLF1O75462 422 aa14.27□□□□□ -0.12
PCDH1-201ENST00000287008 C5orf38Q86SI9 138 aa14.27□□□□□ -0.12
PCDH1-201ENST00000287008 K7EQD1 137 aa14.27□□□□□ -0.13
PCDH1-201ENST00000287008 Q8N1Y9 231 aa14.27□□□□□ -0.13
PCDH1-201ENST00000287008 PRAC2D3DTV9 90 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 UNQ9165/PRO28630Q6UXU0 137 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 FAM167A-AS1Q96KT0 104 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 MRPL36Q9P0J6 103 aaKnown RBP14.26□□□□□ -0.13
PCDH1-201ENST00000287008 IGHG4P01861 327 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 C20orf144Q9BQM9 153 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 PKIGQ9Y2B9 76 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 INAFM1C9JVW0 142 aa14.26□□□□□ -0.13
PCDH1-201ENST00000287008 ODF3BA8MYP8 253 aa14.25□□□□□ -0.13
PCDH1-201ENST00000287008 C9orf47Q6ZRZ4 202 aa14.25□□□□□ -0.13
PCDH1-201ENST00000287008 FSTL3O95633 263 aa14.25□□□□□ -0.13
PCDH1-201ENST00000287008 GATA1P15976 413 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms