RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 TRAV12-3A0A0B4J271 114 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 OR11H12B2RN74 326 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 M0R2Z0 102 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 NXPH4O95158 308 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 IGKV3-20P01619 116 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 PPBPP02775 128 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 SPINK13Q1W4C9 94 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 MUC21Q5SSG8 566 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 SPANXN1Q5VSR9 72 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 OR10D4PQ8NGN7 298 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 C20orf144Q9BQM9 153 aa11.32□□□□□ -0.6
COPS3-201ENST00000268717 IGHV1OR15-1A0A075B7D0 117 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 NUPR1O60356 82 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 RNASE3P12724 160 aaKnown RBP11.31□□□□□ -0.6
COPS3-201ENST00000268717 INSL3P51460 131 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 BEAN1Q3B7T3 259 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 AMN1Q8IY45 258 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 ORMDL3Q8N138 153 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 LAMTOR2Q9Y2Q5 125 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 AGRNO00468 2067 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 MUC21A0A0G2JKD1 596 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 MUC21A0A140T8X8 626 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 CRXO43186 299 aaPredicted RBP11.31□□□□□ -0.6
COPS3-201ENST00000268717 MRPL51Q4U2R6 128 aaKnown RBP11.31□□□□□ -0.6
COPS3-201ENST00000268717 CHCHD1Q96BP2 118 aaKnown RBP11.31□□□□□ -0.6
COPS3-201ENST00000268717 RCHY1Q96PM5 261 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 LINC00467Q9BRT7 94 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 MSRB1Q9NZV6 116 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 PHLDA3Q9Y5J5 127 aa11.31□□□□□ -0.6
COPS3-201ENST00000268717 DNAH3Q8TD57 4116 aa11.3□□□□□ -0.6
COPS3-201ENST00000268717 TRAV12-2A0A075B6T6 113 aa11.3□□□□□ -0.6
COPS3-201ENST00000268717 RBMY1BA6NDE4 496 aaKnown RBP11.3□□□□□ -0.6
COPS3-201ENST00000268717 RBMY1EA6NEQ0 496 aaKnown RBP11.3□□□□□ -0.6
COPS3-201ENST00000268717 RBMY1DP0C7P1 496 aaKnown RBP11.3□□□□□ -0.6
COPS3-201ENST00000268717 RAB4AP20338 218 aa11.3□□□□□ -0.6
COPS3-201ENST00000268717 RNF185Q96GF1 192 aa11.3□□□□□ -0.6
COPS3-201ENST00000268717 TRGV11A0A075B6L2 103 aa11.29□□□□□ -0.6
COPS3-201ENST00000268717 GNRH2O43555 120 aa11.29□□□□□ -0.6
COPS3-201ENST00000268717 IQCJQ1A5X6 159 aa11.29□□□□□ -0.6
COPS3-201ENST00000268717 PRKDCP78527 4128 aaKnown RBP11.29□□□□□ -0.6
COPS3-201ENST00000268717 IGHV3-16A0A0C4DH30 117 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 D6R8Y8 96 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 CD7P09564 240 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 DEFA6Q01524 100 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 TRPT1Q86TN4 253 aaKnown RBP11.28□□□□□ -0.6
COPS3-201ENST00000268717 STHQ8IWL8 128 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 C9orf85Q96MD7 179 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 PRELID3AQ96N28 172 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 C12orf57Q99622 126 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 SAMD10Q9BYL1 202 aa11.28□□□□□ -0.6
COPS3-201ENST00000268717 CKS2P33552 79 aa11.27□□□□□ -0.6
COPS3-201ENST00000268717 SSTP61278 116 aa11.27□□□□□ -0.6
COPS3-201ENST00000268717 ZNF124Q15973 351 aa11.27□□□□□ -0.6
COPS3-201ENST00000268717 HSBP1O75506 76 aa11.27□□□□□ -0.61
COPS3-201ENST00000268717 PMCHP20382 165 aa11.27□□□□□ -0.61
COPS3-201ENST00000268717 NUTF2P61970 127 aaKnown RBP11.27□□□□□ -0.61
COPS3-201ENST00000268717 PYY3Q5JQD4 70 aa11.27□□□□□ -0.61
COPS3-201ENST00000268717 NIT1Q86X76 327 aa11.27□□□□□ -0.61
COPS3-201ENST00000268717 AP1S3Q96PC3 154 aa11.27□□□□□ -0.61
COPS3-201ENST00000268717 G3V4G9 280 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 INSP01308 110 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 EVI2AP22794 236 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 JOSD1Q15040 202 aaPredicted RBP11.26□□□□□ -0.61
COPS3-201ENST00000268717 C9orf66Q5T8R8 295 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 SAMD5Q5TGI4 173 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 Q8N1Y9 231 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 WFDC9Q8NEX5 89 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 MRAP2Q96G30 205 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 URB1-AS1Q96HZ7 61 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 C19orf73Q9NVV2 129 aa11.26□□□□□ -0.61
COPS3-201ENST00000268717 M0R381 172 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 LINC00614P0C842 121 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 RBMY1A1P0DJD3 496 aaKnown RBP11.25□□□□□ -0.61
COPS3-201ENST00000268717 RBMY1CP0DJD4 496 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 AMTP48728 403 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 RBMY1FQ15415 496 aaKnown RBP11.25□□□□□ -0.61
COPS3-201ENST00000268717 RNASEKQ6P5S7 137 aaKnown RBP11.25□□□□□ -0.61
COPS3-201ENST00000268717 DEFB125Q8N687 156 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 DPH3P1Q9H4G8 78 aa11.25□□□□□ -0.61
COPS3-201ENST00000268717 WIPF1O43516 503 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 POM121L12Q8N7R1 296 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 SYT8Q8NBV8 401 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 GSN-AS1Q9NRJ2 163 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 TIMM8BQ9Y5J9 83 aaPredicted RBP11.24□□□□□ -0.61
COPS3-201ENST00000268717 PIK3CD-AS1Q5SR53 167 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 PTH2Q96A98 100 aa11.24□□□□□ -0.61
COPS3-201ENST00000268717 MCRIP2Q9BUT9 160 aaKnown RBP11.24□□□□□ -0.61
COPS3-201ENST00000268717 PRSS47A8MTI9 375 aa11.23□□□□□ -0.61
COPS3-201ENST00000268717 FXYD7P58549 80 aa11.23□□□□□ -0.61
COPS3-201ENST00000268717 OXLD1Q5BKU9 147 aa11.23□□□□□ -0.61
COPS3-201ENST00000268717 KPRPQ5T749 579 aaPredicted RBP11.23□□□□□ -0.61
COPS3-201ENST00000268717 AP5S1Q9NUS5 200 aa11.23□□□□□ -0.61
COPS3-201ENST00000268717 CBY3A6NI87 242 aa11.22□□□□□ -0.61
COPS3-201ENST00000268717 Q6ZWC4 215 aa11.22□□□□□ -0.61
COPS3-201ENST00000268717 FA2HQ7L5A8 372 aa11.22□□□□□ -0.61
COPS3-201ENST00000268717 MAP1LC3AQ9H492 121 aa11.22□□□□□ -0.61
COPS3-201ENST00000268717 MDFICQ9P1T7 246 aa11.22□□□□□ -0.61
COPS3-201ENST00000268717 LINC01546A6NGU7 62 aa11.21□□□□□ -0.61
COPS3-201ENST00000268717 NPYP01303 97 aa11.21□□□□□ -0.61
COPS3-201ENST00000268717 MORN3Q6PF18 240 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms