RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 ZNF876PQ49A33 203 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 EXOC3-AS1Q8N2X6 119 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 ANGP03950 147 aaKnown RBP6.16□□□□□ -1.42
USP3-201ENST00000268049 SLURP1P55000 103 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 RBX1P62877 108 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 V9GYV3 84 aa6.16□□□□□ -1.42
USP3-201ENST00000268049 LY6G5BQ8NDX9 201 aa6.15□□□□□ -1.42
USP3-201ENST00000268049 PIEZO2Q9H5I5 2752 aa6.15□□□□□ -1.42
USP3-201ENST00000268049 COL5A1P20908 1838 aaPredicted RBP6.15□□□□□ -1.42
USP3-201ENST00000268049 IGKV2-40A0A087WW87 121 aaPredicted RBP6.15□□□□□ -1.42
USP3-201ENST00000268049 IGKV1-5P01602 117 aa6.15□□□□□ -1.42
USP3-201ENST00000268049 IGKV2D-40P01614 121 aaPredicted RBP6.15□□□□□ -1.42
USP3-201ENST00000268049 PRIMA1Q86XR5 153 aa6.15□□□□□ -1.42
USP3-201ENST00000268049 TRAV12-1A0A0B4J245 112 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 A0A0J9YY99 117 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 GYPEP15421 78 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 UBE2D1P51668 147 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 SRSF2Q01130 221 aaKnown RBP6.15□□□□□ -1.43
USP3-201ENST00000268049 TDRG1Q3Y452 100 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 CLUHP3Q96NS8 147 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 ANAPC10Q9UM13 185 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 ANKHD1Q8IWZ3 2542 aaKnown RBP6.15□□□□□ -1.43
USP3-201ENST00000268049 DEFB135Q30KP9 77 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 ZNF492Q9P255 531 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 WNK2Q9Y3S1 2297 aa6.15□□□□□ -1.43
USP3-201ENST00000268049 IGHV3-73A0A0B4J1V6 119 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 IGKV1-12A0A0C4DH73 117 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 SMIM27A0A1W2PRY6 76 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 SMIM9A6NGZ8 99 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 INS-IGF2F8WCM5 200 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 TRPT1Q86TN4 253 aaKnown RBP6.14□□□□□ -1.43
USP3-201ENST00000268049 PYGO2Q9BRQ0 406 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 C15orf62A8K5M9 175 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 PMS2P5A8MQ11 134 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 HLA-DRB4P13762 266 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 SPINK13Q1W4C9 94 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 Q86TA4 180 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 C1orf159Q96HA4 380 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 HLA-DRB4X5D2U9 266 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 A0A1W2PPI3 338 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 FAM104BQ5XKR9 115 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 Q8N8P6 123 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 IGKV1-27A0A075B6S5 117 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 CFC1BP0CG36 223 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 CFC1P0CG37 223 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 PDE6HQ13956 83 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 Q6ZR03 302 aa6.14□□□□□ -1.43
USP3-201ENST00000268049 MRPL35Q9NZE8 188 aaKnown RBP6.14□□□□□ -1.43
USP3-201ENST00000268049 TRBV6-6A0A0A6YYG2 114 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 DEFB136Q30KP8 78 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 ATP6V0E2Q8NHE4 81 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 LINC00479Q96M42 142 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 KLF5Q13887 457 aaPredicted RBP6.13□□□□□ -1.43
USP3-201ENST00000268049 SUMO4Q6EEV6 95 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 ZNF833PQ6ZTB9 187 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 CYYR1Q96J86 154 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 U3KQE9 123 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 ANKRD11Q6UB99 2663 aaPredicted RBP6.13□□□□□ -1.43
USP3-201ENST00000268049 ATRXP46100 2492 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 DEFB104AQ8WTQ1 72 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 ZNF747Q9BV97 191 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 TLN1Q9Y490 2541 aaKnown RBP6.13□□□□□ -1.43
USP3-201ENST00000268049 MED13LQ71F56 2210 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 IGLV2-23P01705 113 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 NDUFV3P56181 108 aaKnown RBP6.13□□□□□ -1.43
USP3-201ENST00000268049 C2orf66Q6UXQ4 117 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 DOCK10Q96BY6 2186 aa6.13□□□□□ -1.43
USP3-201ENST00000268049 PRB4P10163 310 aaPredicted RBP6.12□□□□□ -1.43
USP3-201ENST00000268049 UBE2AP49459 152 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 FAM231DQ6ZW35 169 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 PCP2Q8IVA1 136 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 SCRT2Q9NQ03 307 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 CENPFP49454 3210 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 DEFB131BA0A096LNP1 70 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 A0A0B4J2C4 111 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 A0A0U1RQV1 116 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 TMEM213A2RRL7 107 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 F8VRH5 84 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 ZNF726P1Q15940 193 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 LYPD6Q86Y78 171 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 TMEM141Q96I45 108 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 CHD8Q9HCK8 2581 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 TINCRA0A1B0GVN0 87 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 Q6ZUT4 128 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 WIPF3A6NGB9 483 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 C14orf178Q8N769 122 aaPredicted RBP6.12□□□□□ -1.43
USP3-201ENST00000268049 LYPD6BQ8NI32 183 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 NOP10Q9NPE3 64 aaKnown RBP6.12□□□□□ -1.43
USP3-201ENST00000268049 DKK2Q9UBU2 259 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 PRSS46E5RG02 174 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 AJUBAQ96IF1 538 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 C8orf49Q96NF6 230 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 TP53TG1Q9Y2A0 90 aa6.12□□□□□ -1.43
USP3-201ENST00000268049 C10orf55Q5SWW7 151 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 MRPL36Q9P0J6 103 aaKnown RBP6.11□□□□□ -1.43
USP3-201ENST00000268049 A6NDX4 124 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 IGHG2P01859 326 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 MIFP14174 115 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 SMIM2Q9BVW6 85 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 NUPR1O60356 82 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms