RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 ORMDL2Q53FV1 153 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 ZNF256Q9Y2P7 627 aaPredicted RBP8.29□□□□□ -1.08
MSH3-201ENST00000265081 SPTBN1Q01082 2364 aaKnown RBP8.29□□□□□ -1.08
MSH3-201ENST00000265081 IGHV3-16A0A0C4DH30 117 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 TRBV6-5A0A0K0K1A5 114 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 SEC11AP67812 179 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 ANK3Q12955 4377 aaKnown RBP8.29□□□□□ -1.08
MSH3-201ENST00000265081 AP1S3Q96PC3 154 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 NUDT3O95989 172 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 NEXN-AS1Q8NBZ9 246 aa8.29□□□□□ -1.08
MSH3-201ENST00000265081 IGKCP01834 107 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 WFDC12Q8WWY7 111 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 PTH2Q96A98 100 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 H0Y8G0 127 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 POLR2KP53803 58 aaKnown RBP8.28□□□□□ -1.08
MSH3-201ENST00000265081 UBE2V1Q13404 147 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 LINC00467Q9BRT7 94 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 LINC01619G3V211 115 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 FOXI2Q6ZQN5 318 aa8.28□□□□□ -1.08
MSH3-201ENST00000265081 LINC01549A6NIU2 74 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 HOXD3P31249 432 aaPredicted RBP8.27□□□□□ -1.09
MSH3-201ENST00000265081 PHLDA3Q9Y5J5 127 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 NBASA2RRP1 2371 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 CCL25O15444 150 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 HOXA3O43365 443 aaPredicted RBP8.27□□□□□ -1.09
MSH3-201ENST00000265081 DPM2O94777 84 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 C4orf3Q8WVX3 66 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 HSD52Q0P140 79 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 TMEM97Q5BJF2 176 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 Q5PR19 223 aa8.27□□□□□ -1.09
MSH3-201ENST00000265081 IGKV2D-26A0A0A0MRZ7 120 aa8.26□□□□□ -1.09
MSH3-201ENST00000265081 PLNP26678 52 aa8.26□□□□□ -1.09
MSH3-201ENST00000265081 RPL39LQ96EH5 51 aaKnown RBP8.26□□□□□ -1.09
MSH3-201ENST00000265081 CLUHP3Q96NS8 147 aa8.26□□□□□ -1.09
MSH3-201ENST00000265081 RIPPLY3P57055 190 aa8.26□□□□□ -1.09
MSH3-201ENST00000265081 SNRPD3P62318 126 aaKnown RBP8.26□□□□□ -1.09
MSH3-201ENST00000265081 PIK3CD-AS1Q5SR53 167 aa8.26□□□□□ -1.09
MSH3-201ENST00000265081 C14orf178Q8N769 122 aaPredicted RBP8.26□□□□□ -1.09
MSH3-201ENST00000265081 DUSP14O95147 198 aaKnown RBP8.25□□□□□ -1.09
MSH3-201ENST00000265081 SPAG8Q99932 426 aaPredicted RBP8.25□□□□□ -1.09
MSH3-201ENST00000265081 TRBV27A0A0K0K1C4 114 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 K7EP13 123 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 TCTEX1D4Q5JR98 221 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 UFSP1Q6NVU6 142 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 PCP2Q8IVA1 136 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 C18orf15Q96N68 181 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 CDKN1BP46527 198 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 MORN3Q6PF18 240 aaPredicted RBP8.25□□□□□ -1.09
MSH3-201ENST00000265081 JMJD8Q96S16 334 aa8.25□□□□□ -1.09
MSH3-201ENST00000265081 FOXC2Q99958 501 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 CUBNO60494 3623 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 A1L4Q6 167 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 RPL11P62913 178 aaKnown RBP8.24□□□□□ -1.09
MSH3-201ENST00000265081 SUMO4Q6EEV6 95 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 FAM159AQ6UWV7 190 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 Q6ZVH6 145 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 MXRA5Q9NR99 2828 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 IGIPA6NJ69 53 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 F8VRH5 84 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 H3BRM9 83 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 SRD5A1P18405 259 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 SYNJ2BPP57105 145 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 MAPK1IP1LQ8NDC0 245 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 MRPL35Q9NZE8 188 aaKnown RBP8.24□□□□□ -1.09
MSH3-201ENST00000265081 H7C1H1 209 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 TSHBP01222 138 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 S100A4P26447 101 aaKnown RBP8.24□□□□□ -1.09
MSH3-201ENST00000265081 BAALCQ8WXS3 180 aa8.24□□□□□ -1.09
MSH3-201ENST00000265081 TIMM8BQ9Y5J9 83 aaPredicted RBP8.24□□□□□ -1.09
MSH3-201ENST00000265081 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.23□□□□□ -1.09
MSH3-201ENST00000265081 CRYGDP07320 174 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 WFDC3Q8IUB2 231 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 ERASQ7Z444 233 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 IGHV1OR15-1A0A075B7D0 117 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 RBMY1A1P0DJD3 496 aaKnown RBP8.23□□□□□ -1.09
MSH3-201ENST00000265081 RBMY1CP0DJD4 496 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 RBMY1FQ15415 496 aaKnown RBP8.23□□□□□ -1.09
MSH3-201ENST00000265081 TM2D2Q9BX73 214 aa8.23□□□□□ -1.09
MSH3-201ENST00000265081 J3KRW8 73 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 FHL3Q13643 280 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 Q96MF0 132 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 M0QY20 66 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 SPRY2O43597 315 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 ZNF688P0C7X2 276 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 NSUN5P1Q3KNT7 163 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 Q8N1Y9 231 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 TRAV12-3A0A0B4J271 114 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 TAL2Q16559 108 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 TEX29Q8N6K0 151 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 TIMM17AQ99595 171 aa8.22□□□□□ -1.09
MSH3-201ENST00000265081 KRTAP1-1Q07627 177 aa8.21□□□□□ -1.09
MSH3-201ENST00000265081 C2orf66Q6UXQ4 117 aa8.21□□□□□ -1.09
MSH3-201ENST00000265081 C18orf65Q6ZTR6 163 aa8.21□□□□□ -1.09
MSH3-201ENST00000265081 PHLDA1Q8WV24 401 aaPredicted RBP8.21□□□□□ -1.09
MSH3-201ENST00000265081 PRSS1P07477 247 aa8.21□□□□□ -1.1
MSH3-201ENST00000265081 MDFICQ9P1T7 246 aa8.21□□□□□ -1.1
MSH3-201ENST00000265081 IGLV4-69A0A075B6H9 119 aa8.21□□□□□ -1.1
MSH3-201ENST00000265081 RBMY1BA6NDE4 496 aaKnown RBP8.21□□□□□ -1.1
MSH3-201ENST00000265081 RBMY1EA6NEQ0 496 aaKnown RBP8.21□□□□□ -1.1
MSH3-201ENST00000265081 RBMY1DP0C7P1 496 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms