RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 E9PLD3 99 aa12.48□□□□□ -0.41
ZNF541-201ENST00000263351 RPL39P62891 51 aaKnown RBP12.48□□□□□ -0.41
ZNF541-201ENST00000263351 TMEM190Q8WZ59 177 aa12.48□□□□□ -0.41
ZNF541-201ENST00000263351 PHLDA3Q9Y5J5 127 aa12.48□□□□□ -0.41
ZNF541-201ENST00000263351 MXRA5Q9NR99 2828 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 IGHV4-38-2P0DP08 117 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 CD300EQ496F6 205 aaPredicted RBP12.47□□□□□ -0.41
ZNF541-201ENST00000263351 C2orf66Q6UXQ4 117 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 BAALCQ8WXS3 180 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 TRBV7-3A0A075B6L6 115 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 F8VRH5 84 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 IGKV3-20P01619 116 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 RNASE3P12724 160 aaKnown RBP12.47□□□□□ -0.41
ZNF541-201ENST00000263351 HLA-DRB4P13762 266 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 TSSC4Q9Y5U2 329 aaPredicted RBP12.47□□□□□ -0.41
ZNF541-201ENST00000263351 HLA-DRB4X5D2U9 266 aa12.47□□□□□ -0.41
ZNF541-201ENST00000263351 TRBV7-1A0A0A6YYK4 115 aa12.46□□□□□ -0.41
ZNF541-201ENST00000263351 LGALS1P09382 135 aaKnown RBP12.46□□□□□ -0.41
ZNF541-201ENST00000263351 TGFAP01135 160 aa12.46□□□□□ -0.42
ZNF541-201ENST00000263351 SMAGPQ0VAQ4 97 aa12.46□□□□□ -0.42
ZNF541-201ENST00000263351 NEXN-AS1Q8NBZ9 246 aa12.46□□□□□ -0.42
ZNF541-201ENST00000263351 PRADC1Q9BSG0 188 aa12.46□□□□□ -0.42
ZNF541-201ENST00000263351 H7C1H1 209 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 SLC25A16P16260 332 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 RAB9AP51151 201 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 C10orf99Q6UWK7 81 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 FOXI2Q6ZQN5 318 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 SPANXB1Q9NS25 103 aaPredicted RBP12.45□□□□□ -0.42
ZNF541-201ENST00000263351 SMPXQ9UHP9 88 aa12.45□□□□□ -0.42
ZNF541-201ENST00000263351 OR11H12B2RN74 326 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 SOCS3O14543 225 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 TSHBP01222 138 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 MORN3Q6PF18 240 aaPredicted RBP12.44□□□□□ -0.42
ZNF541-201ENST00000263351 OR11H1Q8NG94 326 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 OR11H2Q8NH07 326 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 IGHV4-4A0A075B6R2 117 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 MYMXA0A1B0GTQ4 84 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 CRYGDP07320 174 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 PF4V1P10720 104 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 KLRB1Q12918 225 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 TOMM6Q96B49 74 aa12.44□□□□□ -0.42
ZNF541-201ENST00000263351 OPRPNQ99935 248 aaPredicted RBP12.44□□□□□ -0.42
ZNF541-201ENST00000263351 AKAP9Q99996 3911 aa12.43□□□□□ -0.42
ZNF541-201ENST00000263351 PKD1L2Q7Z442 2459 aa12.43□□□□□ -0.42
ZNF541-201ENST00000263351 PLNP26678 52 aa12.43□□□□□ -0.42
ZNF541-201ENST00000263351 ASIPP42127 132 aa12.43□□□□□ -0.42
ZNF541-201ENST00000263351 OR10J6PQ8NGY7 276 aa12.43□□□□□ -0.42
ZNF541-201ENST00000263351 SPAG8Q99932 426 aaPredicted RBP12.43□□□□□ -0.42
ZNF541-201ENST00000263351 TRAV12-2A0A075B6T6 113 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 ZNF815PA8K554 130 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 AZU1P20160 251 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 C9orf139Q6ZV77 190 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 DPH3P1Q9H4G8 78 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 IGHV4-61A0A0C4DH41 118 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 C11orf86A6NJI1 115 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 PRSS47A8MTI9 375 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 IGHV4-39P01824 125 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 C19orf54Q5BKX5 351 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 FAM74A4Q5TZK3 123 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 ZFP2Q6ZN57 461 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 PGPEP1Q9NXJ5 209 aa12.42□□□□□ -0.42
ZNF541-201ENST00000263351 TSPEAR-AS2P59090 65 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 PTH2Q96A98 100 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 MRAP2Q96G30 205 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 MOB4Q9Y3A3 225 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 MYO18BQ8IUG5 2567 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 TRAV21A0A0B4J279 112 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 H3BUX3 64 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 APOMO95445 188 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 RRN3P1Q2M238 152 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 RHPN1-AS1Q9BWJ2 59 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 TP53TG1Q9Y2A0 90 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 NOTCH3Q9UM47 2321 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 FBN2P35556 2912 aa12.41□□□□□ -0.42
ZNF541-201ENST00000263351 TRAV12-3A0A0B4J271 114 aa12.4□□□□□ -0.42
ZNF541-201ENST00000263351 SCGB2A2Q13296 93 aa12.4□□□□□ -0.42
ZNF541-201ENST00000263351 SCGB1D4Q6XE38 83 aa12.4□□□□□ -0.42
ZNF541-201ENST00000263351 LINC01549A6NIU2 74 aa12.4□□□□□ -0.42
ZNF541-201ENST00000263351 PRO0461Q9UI25 63 aa12.4□□□□□ -0.42
ZNF541-201ENST00000263351 IGHV3-64A0A075B6Q5 118 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 LINC00315P59091 139 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 MRPL53Q96EL3 112 aaKnown RBP12.39□□□□□ -0.43
ZNF541-201ENST00000263351 LINC00477Q96M19 166 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 ZFYVE26Q68DK2 2539 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 F5H697 171 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 TLN2Q9Y4G6 2542 aa12.39□□□□□ -0.43
ZNF541-201ENST00000263351 KLK9Q2XQG4 91 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 ORMDL2Q53FV1 153 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 KLK9Q9UKQ9 250 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 IGLV4-69A0A075B6H9 119 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 PRM2P04554 102 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 SMCPP49901 116 aaPredicted RBP12.38□□□□□ -0.43
ZNF541-201ENST00000263351 C20orf78Q9BR46 151 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 MRPL16Q9NX20 251 aaKnown RBP12.38□□□□□ -0.43
ZNF541-201ENST00000263351 ZNF256Q9Y2P7 627 aaPredicted RBP12.38□□□□□ -0.43
ZNF541-201ENST00000263351 NIPBLQ6KC79 2804 aaeCLIP12.38□□□□□ -0.43
ZNF541-201ENST00000263351 MYO9AB2RTY4 2548 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 CACNA1AO00555 2505 aa12.38□□□□□ -0.43
ZNF541-201ENST00000263351 TRAV12-1A0A0B4J245 112 aa12.37□□□□□ -0.43
ZNF541-201ENST00000263351 LOC107984156A0A0G2JMH3 177 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms