RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 IGHV3-73A0A0B4J1V6 119 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 TAL2Q16559 108 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 COA6Q5JTJ3 125 aaKnown RBP10.38□□□□□ -0.75
LDLR-201ENST00000252444 CLUHP3Q96NS8 147 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 MRPL36Q9P0J6 103 aaKnown RBP10.38□□□□□ -0.75
LDLR-201ENST00000252444 SPRY2O43597 315 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 Q8N2B8 174 aa10.38□□□□□ -0.75
LDLR-201ENST00000252444 GFI1BQ5VTD9 330 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 ZNF503Q96F45 646 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 DPH3Q96FX2 82 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 FREM1Q5H8C1 2179 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 C21orf62-AS1Q17RA5 79 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 OR13C6PQ8NH95 151 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 NOP10Q9NPE3 64 aaKnown RBP10.37□□□□□ -0.75
LDLR-201ENST00000252444 GVINP1Q7Z2Y8 2422 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 CCL18P55774 89 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 CFHR3Q02985 330 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 UNQ9165/PRO28630Q6UXU0 137 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 HERV-K104P63124 156 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 C6orf226Q5I0X4 101 aa10.37□□□□□ -0.75
LDLR-201ENST00000252444 NPSP0C0P6 89 aa10.36□□□□□ -0.75
LDLR-201ENST00000252444 LEPROTO15243 131 aa10.36□□□□□ -0.75
LDLR-201ENST00000252444 ORAOV1Q8WV07 137 aa10.36□□□□□ -0.75
LDLR-201ENST00000252444 TM2D2Q9BX73 214 aa10.36□□□□□ -0.75
LDLR-201ENST00000252444 MRPL16Q9NX20 251 aaKnown RBP10.36□□□□□ -0.75
LDLR-201ENST00000252444 C3orf79P0CE67 100 aa10.36□□□□□ -0.75
LDLR-201ENST00000252444 H3BMM0 161 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 SIVA1O15304 175 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 HLA-DMBP28068 263 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 CRYBA4P53673 196 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 F8VRH5 84 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 ATP6V0E2Q8NHE4 81 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 PCSK5Q92824 1860 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 LOC107984156A0A0G2JMH3 177 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 LOC105371267A0A1B0GV96 52 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 MORN5Q5VZ52 161 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 Q6ZWC4 215 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 ARL17AQ8IVW1 177 aa10.35□□□□□ -0.75
LDLR-201ENST00000252444 TRAV12-1A0A0B4J245 112 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 ZNF561-AS1K7EIQ3 104 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 K7ERU9 68 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 APRG1Q8IVJ8 170 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 CHAC1Q9BUX1 264 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 USF3Q68DE3 2245 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 PRSS47A8MTI9 375 aa10.34□□□□□ -0.75
LDLR-201ENST00000252444 F6UB75 175 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 CXCL5P42830 114 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 LINC00158P58513 81 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 TIMM17AQ99595 171 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 NPYP01303 97 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 SNAI2O43623 268 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 TRBV12-3P01733 135 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 SUMO4Q6EEV6 95 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 POLEQ07864 2286 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 ANKHD1Q8IWZ3 2542 aaKnown RBP10.33□□□□□ -0.76
LDLR-201ENST00000252444 GNRH2O43555 120 aa10.33□□□□□ -0.76
LDLR-201ENST00000252444 PHLDA1Q8WV24 401 aaPredicted RBP10.33□□□□□ -0.76
LDLR-201ENST00000252444 RPL32P62910 135 aaKnown RBP10.32□□□□□ -0.76
LDLR-201ENST00000252444 PRO0255Q9UI72 69 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 MRGPRG-AS1Q2M3A8 158 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 ATOH7Q8N100 152 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 COX11Q9Y6N1 276 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 PKDREJQ9NTG1 2253 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 TRBV7-3A0A075B6L6 115 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 Q8N1Y9 231 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 MLST8Q9BVC4 326 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 SMKR1H3BMG3 65 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 PLA2G2EQ9NZK7 142 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 SPTBN2O15020 2390 aa10.32□□□□□ -0.76
LDLR-201ENST00000252444 Q6ZVH6 145 aa10.31□□□□□ -0.76
LDLR-201ENST00000252444 C10orf126Q8N4M7 172 aa10.31□□□□□ -0.76
LDLR-201ENST00000252444 S100A7L2Q5SY68 101 aa10.31□□□□□ -0.76
LDLR-201ENST00000252444 LINC01548A6NM66 108 aa10.31□□□□□ -0.76
LDLR-201ENST00000252444 H3BQ85 93 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 LINC00467Q9BRT7 94 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 CADP27708 2225 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 IGHV3-16A0A0C4DH30 117 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 IGLC6P0CF74 106 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 C14orf177Q52M58 125 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 A0A1W2PPR1 153 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 UTF1Q5T230 341 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 BBC3Q96PG8 261 aaPredicted RBP10.3□□□□□ -0.76
LDLR-201ENST00000252444 VPS25Q9BRG1 176 aa10.3□□□□□ -0.76
LDLR-201ENST00000252444 CTAG1AP78358 180 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 PRIMA1Q86XR5 153 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 ERG28Q9UKR5 140 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 PRAC2D3DTV9 90 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 ZC2HC1BQ5TFG8 222 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 ADAMTSL5Q6ZMM2 481 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 ESDP10768 282 aa10.29□□□□□ -0.76
LDLR-201ENST00000252444 NHP2Q9NX24 153 aaKnown RBP10.29□□□□□ -0.76
LDLR-201ENST00000252444 KLK9Q2XQG4 91 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 C15orf53Q8NAA6 179 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 TRAV13-1A0A0B4J241 112 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 PTH2Q96A98 100 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 HHLA3Q9XRX5 114 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 SELENOKQ9Y6D0 94 aa10.28□□□□□ -0.76
LDLR-201ENST00000252444 GYPEP15421 78 aa10.27□□□□□ -0.76
LDLR-201ENST00000252444 C14orf144Q96I85 54 aa10.27□□□□□ -0.76
LDLR-201ENST00000252444 RTTNQ86VV8 2226 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms