RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-229ENST00000641891 SNAI2O43623 268 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 RNASE4P34096 147 aaKnown RBP12.79□□□□□ -0.36
PHGDH-229ENST00000641891 SPANXN1Q5VSR9 72 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 Q6YL49 198 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 FAM19A4Q96LR4 140 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 CENPEQ02224 2701 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 K7EMT4 169 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 TCAPO15273 167 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 HOXA3O43365 443 aaPredicted RBP12.79□□□□□ -0.36
PHGDH-229ENST00000641891 HBDP02042 147 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 PPBPP02775 128 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 LAMTOR2Q9Y2Q5 125 aa12.79□□□□□ -0.36
PHGDH-229ENST00000641891 TFPI2P48307 235 aa12.78□□□□□ -0.36
PHGDH-229ENST00000641891 ZNF702PQ9H963 129 aa12.78□□□□□ -0.36
PHGDH-229ENST00000641891 ST20Q9HBF5 79 aa12.78□□□□□ -0.36
PHGDH-229ENST00000641891 TRAV21A0A0B4J279 112 aa12.77□□□□□ -0.36
PHGDH-229ENST00000641891 DCANP1Q8TF63 244 aa12.77□□□□□ -0.36
PHGDH-229ENST00000641891 WFDC12Q8WWY7 111 aa12.77□□□□□ -0.36
PHGDH-229ENST00000641891 Q96MF0 132 aa12.77□□□□□ -0.36
PHGDH-229ENST00000641891 DUX5Q96PT3 197 aa12.77□□□□□ -0.36
PHGDH-229ENST00000641891 ANXA2RQ3ZCQ2 193 aa12.77□□□□□ -0.37
PHGDH-229ENST00000641891 IGHV4-4A0A075B6R2 117 aa12.76□□□□□ -0.37
PHGDH-229ENST00000641891 STPG4Q8N801 248 aa12.76□□□□□ -0.37
PHGDH-229ENST00000641891 HSBP1L1C9JCN9 74 aa12.76□□□□□ -0.37
PHGDH-229ENST00000641891 HINT1P49773 126 aaPredicted RBP12.76□□□□□ -0.37
PHGDH-229ENST00000641891 OR2K2Q8NGT1 345 aa12.76□□□□□ -0.37
PHGDH-229ENST00000641891 M0R381 172 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 G0S2P27469 103 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 CACNG7P62955 275 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 SMIM15Q7Z3B0 74 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 MRPS16Q9Y3D3 137 aaKnown RBP12.75□□□□□ -0.37
PHGDH-229ENST00000641891 PTPN13Q12923 2485 aa12.75□□□□□ -0.37
PHGDH-229ENST00000641891 IGHV4OR15-8A0A075B7B6 117 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 A0A087WW49 117 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 TMEM89A2RUT3 159 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 GNRH2O43555 120 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 SYNJ2BPP57105 145 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 NRACQ8N912 160 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 IFI27L1Q96BM0 104 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 C18orf15Q96N68 181 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 MS4A6AQ9H2W1 248 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 LINC01546A6NGU7 62 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 LEPP41159 167 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 KRTAP1-3Q8IUG1 177 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 APRG1Q8IVJ8 170 aa12.74□□□□□ -0.37
PHGDH-229ENST00000641891 S100A4P26447 101 aaKnown RBP12.73□□□□□ -0.37
PHGDH-229ENST00000641891 ASIPP42127 132 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 NXT2Q9NPJ8 142 aaKnown RBP12.73□□□□□ -0.37
PHGDH-229ENST00000641891 GOLT1BQ9Y3E0 138 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 ABCA12Q86UK0 2595 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 IGLV2-18A0A075B6J9 118 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 LGALS1P09382 135 aaKnown RBP12.73□□□□□ -0.37
PHGDH-229ENST00000641891 ZNF688P0C7X2 276 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 ID1P41134 155 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 COL5A1-AS1Q5SY13 56 aa12.73□□□□□ -0.37
PHGDH-229ENST00000641891 LRRC75A-AS1Q8N1F1 130 aa12.72□□□□□ -0.37
PHGDH-229ENST00000641891 MYOZ3Q8TDC0 251 aa12.72□□□□□ -0.37
PHGDH-229ENST00000641891 MXRA5Q9NR99 2828 aa12.72□□□□□ -0.37
PHGDH-229ENST00000641891 ZNF25P17030 456 aaPredicted RBP12.71□□□□□ -0.37
PHGDH-229ENST00000641891 LGALS9BQ3B8N2 356 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 PSMG4Q5JS54 123 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 LGALS9CQ6DKI2 356 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 SLC25A34Q6PIV7 304 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 C18orf65Q6ZTR6 163 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 Q8N8P6 123 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 ZNF469Q96JG9 3925 aaPredicted RBP12.71□□□□□ -0.37
PHGDH-229ENST00000641891 RNASE3P12724 160 aaKnown RBP12.71□□□□□ -0.37
PHGDH-229ENST00000641891 FCER1GP30273 86 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 TCTAP57738 103 aa12.71□□□□□ -0.37
PHGDH-229ENST00000641891 DOPEY2Q9Y3R5 2298 aa12.71□□□□□ -0.38
PHGDH-229ENST00000641891 KLLNB2CW77 178 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 ELANEP08246 267 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 HOXD3P31249 432 aaPredicted RBP12.7□□□□□ -0.38
PHGDH-229ENST00000641891 HIST2H2BCQ6DN03 193 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 TMEM158Q8WZ71 300 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 PHLDA3Q9Y5J5 127 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 EPG5Q9HCE0 2579 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 PRRC2AP48634 2157 aaKnown RBP12.7□□□□□ -0.38
PHGDH-229ENST00000641891 IGKV3-20P01619 116 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 ANKRD39Q53RE8 183 aa12.7□□□□□ -0.38
PHGDH-229ENST00000641891 C14orf178Q8N769 122 aaPredicted RBP12.7□□□□□ -0.38
PHGDH-229ENST00000641891 NAV2Q8IVL1 2488 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 TRBV7-9A0A0J9YWB2 115 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 DEFB136Q30KP8 78 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 DKK2Q9UBU2 259 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 NBPF19A0A087WUL8 3843 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 UBE2E2Q96LR5 201 aa12.69□□□□□ -0.38
PHGDH-229ENST00000641891 TRAV12-3A0A0B4J271 114 aa12.68□□□□□ -0.38
PHGDH-229ENST00000641891 K7EQG2 157 aa12.68□□□□□ -0.38
PHGDH-229ENST00000641891 HIST2H2BDQ6DRA6 164 aa12.68□□□□□ -0.38
PHGDH-229ENST00000641891 CD5LO43866 347 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 MRAP2Q96G30 205 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 TEX15Q9BXT5 2789 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 MGPP08493 103 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 MPV17L2Q567V2 206 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 SAMD13Q5VXD3 122 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 Q6ZVH6 145 aa12.67□□□□□ -0.38
PHGDH-229ENST00000641891 RPL39LQ96EH5 51 aaKnown RBP12.67□□□□□ -0.38
PHGDH-229ENST00000641891 TMEM208Q9BTX3 173 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms