RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CHCHD5Q9BSY4 110 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1OR15-1A0A075B7D0 117 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGKV1-16P04430 117 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 BAALCQ8WXS3 180 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 MRPL36Q9P0J6 103 aaKnown RBP3.67□□□□□ -1.82
SCN1A-220ENST00000641603 TANC1Q9C0D5 1861 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 PLXNA2O75051 1894 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1-18A0A0C4DH31 117 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 UBE2D3P61077 147 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 UBE2D2P62837 147 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 NEXN-AS1Q8NBZ9 246 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 MPDZO75970 2070 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 LINC00173Q6ZV60 143 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 DYNAPQ8N1N2 210 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 BRWD3Q6RI45 1802 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 USP17L23D6RBM5 183 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 HIST2H2BCQ6DN03 193 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 HIST2H2BDQ6DRA6 164 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 POLEQ07864 2286 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV3-64A0A075B6Q5 118 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 FOXE3Q13461 319 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 TMEM178BH3BS89 294 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 ZNF491Q8N8L2 437 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 CFHR4Q92496 578 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 C5orf63A6NC05 138 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV3-33P01772 117 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 FXYD7P58549 80 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 C9orf47Q6ZRZ4 202 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 RNF144BQ7Z419 303 aa3.67□□□□□ -1.82
SCN1A-220ENST00000641603 FRMPD3Q5JV73 1810 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 CEP192Q8TEP8 1941 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 RFPL3SP0C7P2 107 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 C8orf49Q96NF6 230 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 CRYGAP11844 174 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 C10orf55Q5SWW7 151 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 FREM3P0C091 2139 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 VPREB3Q9UKI3 123 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 COL6A6A6NMZ7 2263 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 TRBV10-3A0A0K0K1G6 114 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 SPRY4Q9C004 299 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 TINCRA0A1B0GVN0 87 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 CNFNQ9BYD5 112 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 TEX49A0A1B0GTD5 131 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 SP5Q6BEB4 398 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-220ENST00000641603 VMO1Q7Z5L0 202 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 ODF3Q96PU9 254 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 SCN5AQ14524 2016 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 NSUN5P1Q3KNT7 163 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 Q8N976 141 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 BLCAPP62952 87 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 IGKV3-7A0A075B6H7 116 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 TRBV7-3A0A075B6L6 115 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 EFNA4P52798 201 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 SELENOKQ9Y6D0 94 aa3.66□□□□□ -1.82
SCN1A-220ENST00000641603 IGLV2-8P01709 118 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 C1orf159Q96HA4 380 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 PROP1O75360 226 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 LINC00574Q9H8X3 128 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 A0A0U1RQV1 116 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 CDK2AP2O75956 126 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 TRGV4A0A0C4DH28 118 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 A0A0J9YY99 117 aa3.65□□□□□ -1.82
SCN1A-220ENST00000641603 H7C423 109 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 E9PLN8 166 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 CCDC179H3BU77 68 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 RSPO1Q2MKA7 263 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-220ENST00000641603 Q9H8V8 135 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 FANCMQ8IYD8 2048 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF71Q9NQZ8 489 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-220ENST00000641603 PYGO1Q9Y3Y4 419 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 PFN2P35080 140 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 DOCK10Q96BY6 2186 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 STHQ8IWL8 128 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 C20orf203Q8NBC4 194 aa3.65□□□□□ -1.83
SCN1A-220ENST00000641603 RNASE6Q93091 150 aaKnown RBP3.65□□□□□ -1.83
SCN1A-220ENST00000641603 MYLKQ15746 1914 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 LOC107984640A0A0U1RRK4 108 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 MBD3L4A6NDZ8 208 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 MBD3L3A6NE82 208 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 MBD3L5A6NJ08 208 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 MBD3L2Q8NHZ7 208 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 WI2-2373I1.2A0A1W2PRP0 233 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 C17orf58Q2M2W7 97 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 CACNA1EQ15878 2313 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 BSPH1Q075Z2 132 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 U3KQE9 123 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 MYCNOSP40205 109 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 DSCR9P59020 149 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 BRWD1Q9NSI6 2320 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 IGLV3-9A0A075B6K5 115 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 SPINK2P20155 84 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 UBE2D1P51668 147 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 RHPN1-AS1Q9BWJ2 59 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 NFE4Q86UQ8 179 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 C20orf197Q8N268 126 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 ABCA7Q8IZY2 2146 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 UBE2AP49459 152 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 FAM19A5Q7Z5A7 132 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 UPK3BQ9BT76 320 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 AGPAT4-IT1Q9H0P7 198 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms