RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NHLH2Q02577 135 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 CNPY1Q3B7I2 92 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 Q8N3U1 123 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 OR5C1Q8NGR4 320 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 PRADC1Q9BSG0 188 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 TM2D2Q9BX73 214 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 NUDT15Q9NV35 164 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 DIRC3C9JPN6 131 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 LYRM1O43325 122 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 EIF3GO75821 320 aaKnown RBP eCLIP9.96□□□□□ -0.82
SYNE2-228ENST00000639659 C1QBP02746 253 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 TCRBP04435 133 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 SLC25A29Q8N8R3 303 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 ATP5SQ99766 215 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 SDF2L1Q9HCN8 221 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 KCNIP2Q9NS61 270 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 DNAH8Q96JB1 4490 aa9.96□□□□□ -0.82
SYNE2-228ENST00000639659 RHOHQ15669 191 aa9.95□□□□□ -0.82
SYNE2-228ENST00000639659 LELP1Q5T871 98 aa9.95□□□□□ -0.82
SYNE2-228ENST00000639659 SERTAD4-AS1Q5TG53 156 aa9.95□□□□□ -0.82
SYNE2-228ENST00000639659 CMTM2Q8TAZ6 248 aa9.95□□□□□ -0.82
SYNE2-228ENST00000639659 TRAV21A0A0B4J279 112 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 LRRC37A5PQ49AS3 106 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 GOLT1AQ6ZVE7 132 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 SCXQ7RTU7 201 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 NMES1Q9C002 83 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 LENEPQ9Y5L5 61 aa9.94□□□□□ -0.82
SYNE2-228ENST00000639659 C17orf112F2Z3M2 114 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 PLA2G10O15496 165 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 TDRG1Q3Y452 100 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 ZNF876PQ49A33 203 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 KHDC3LQ587J8 217 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 FFAR4Q5NUL3 377 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 Q6ZSA8 131 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 ATP6V0E2Q8NHE4 81 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 ASB13Q8WXK3 278 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 BAALCQ8WXS3 180 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 WDR61Q9GZS3 305 aaKnown RBP9.93□□□□□ -0.82
SYNE2-228ENST00000639659 GTSF1LQ9H1H1 148 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 TREM1Q9NP99 234 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 PLA2G2DQ9UNK4 145 aa9.93□□□□□ -0.82
SYNE2-228ENST00000639659 HMCN2Q8NDA2 5059 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 TRAV8-1A0A0A6YYK1 113 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 PGPA6NDG6 321 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 RBFOX3A6NFN3 312 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 H2AFB2P0C5Z0 115 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 LAGE3Q14657 143 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 CFAP126Q5VTH2 177 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 BOLA1Q9Y3E2 137 aa9.92□□□□□ -0.82
SYNE2-228ENST00000639659 SIX6O95475 246 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 GNG5P63218 68 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 IL15RAQ13261 267 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 FAM74A1Q5RGS3 127 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 DPPA3Q6W0C5 159 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 DAZ4Q86SG3 579 aaKnown RBP9.91□□□□□ -0.82
SYNE2-228ENST00000639659 KCNS1Q96KK3 526 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 SGK494Q96LW2 274 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 RBM38Q9H0Z9 239 aaKnown RBP9.91□□□□□ -0.82
SYNE2-228ENST00000639659 DAZ3Q9NR90 486 aaKnown RBP9.91□□□□□ -0.82
SYNE2-228ENST00000639659 OTORQ9NRC9 128 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 OR5AC2Q9NZP5 309 aa9.91□□□□□ -0.82
SYNE2-228ENST00000639659 TRAV8-3A0A0A6YYJ7 113 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 TRBV6-4A0A1B0GX49 114 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 GAGE12JA6NER3 117 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 RS1O15537 224 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 TAS2R45P59539 299 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 GAGE1Q13065 139 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 GAGE4Q13068 117 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 GAGE5Q13069 117 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 GAGE13Q4V321 117 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 TMED6Q8WW62 240 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 UBR4Q5T4S7 5183 aa9.9□□□□□ -0.82
SYNE2-228ENST00000639659 LRP1Q07954 4544 aaKnown RBP9.9□□□□□ -0.82
SYNE2-228ENST00000639659 TVP23CQ96ET8 276 aa9.89□□□□□ -0.83
SYNE2-228ENST00000639659 MBD2Q9UBB5 411 aa9.89□□□□□ -0.83
SYNE2-228ENST00000639659 GGTLC3B5MD39 225 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 TOR2AQ5JU69 321 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 ZNF506Q5JVG8 444 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 TMEM75Q8N9X5 138 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 NDFIP1Q9BT67 221 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 SMIM3Q9BZL3 60 aa9.88□□□□□ -0.83
SYNE2-228ENST00000639659 IGKV2D-24A0A075B6R9 120 aa9.87□□□□□ -0.83
SYNE2-228ENST00000639659 FAM240BA0A1B0GVZ2 78 aa9.87□□□□□ -0.83
SYNE2-228ENST00000639659 PGPEP1LA6NFU8 196 aa9.87□□□□□ -0.83
SYNE2-228ENST00000639659 IGLV2-8P01709 118 aa9.87□□□□□ -0.83
SYNE2-228ENST00000639659 MGST1P10620 155 aaKnown RBP9.87□□□□□ -0.83
SYNE2-228ENST00000639659 HMGB3O15347 200 aaKnown RBP9.86□□□□□ -0.83
SYNE2-228ENST00000639659 SCGB1C1Q8TD33 95 aa9.86□□□□□ -0.83
SYNE2-228ENST00000639659 RMI2Q96E14 147 aa9.86□□□□□ -0.83
SYNE2-228ENST00000639659 CHAC1Q9BUX1 264 aa9.86□□□□□ -0.83
SYNE2-228ENST00000639659 C11orf21Q9P2W6 132 aa9.86□□□□□ -0.83
SYNE2-228ENST00000639659 URGCP-MRPS24S4R325 110 aa9.86□□□□□ -0.83
SYNE2-228ENST00000639659 A0A1W2PPV4 95 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 H0YIZ8 118 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 CIDEAO60543 219 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 OXTP01178 125 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 GCGP01275 180 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 ZNF80P51504 273 aaPredicted RBP9.85□□□□□ -0.83
SYNE2-228ENST00000639659 OR2T35Q8NGX2 323 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 CIRBP-AS1Q8TBR5 109 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms