RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CACNA1BQ00975 2339 aa4.48□□□□□ -1.69
SCN1A-216ENST00000637968 WNT9BO14905 357 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 C2orf66Q6UXQ4 117 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 SLC50A1Q9BRV3 221 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 TCF20Q9UGU0 1960 aaKnown RBP4.47□□□□□ -1.69
SCN1A-216ENST00000637968 WISP1O95388 367 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV3-30P01768 117 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 IGHV3-30-5P0DP03 117 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 KRTAP27-1Q3LI81 207 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-216ENST00000637968 CLEC2BQ92478 149 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 VSIG2Q96IQ7 327 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 PRR25Q96S07 402 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 DOCK7Q96N67 2140 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 A0A0G2JNJ9 132 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 ZNF561-AS1K7EIQ3 104 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 TRIAP1O43715 76 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 BAALC-AS2P0C853 105 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 COX6B1P14854 86 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 CD164Q04900 197 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 ZNF837Q96EG3 531 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-216ENST00000637968 TMEM14BQ9NUH8 114 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 Q9UFV3 132 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 SLC25A15Q9Y619 301 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 M0R1B8 84 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 PSMB8P28062 276 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 TIRAPP58753 221 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 DYNAPQ8N1N2 210 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 LYPD1Q8N2G4 141 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 MPLKIPQ8TAP9 179 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 MOB4Q9Y3A3 225 aa4.47□□□□□ -1.69
SCN1A-216ENST00000637968 PI4KAP42356 2102 aa4.46□□□□□ -1.69
SCN1A-216ENST00000637968 CLPSP04118 112 aa4.46□□□□□ -1.69
SCN1A-216ENST00000637968 ATP5EP56381 51 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-216ENST00000637968 FAM90A1Q86YD7 464 aa4.46□□□□□ -1.69
SCN1A-216ENST00000637968 TPSG1Q9NRR2 321 aa4.46□□□□□ -1.69
SCN1A-216ENST00000637968 FAM27E3Q08E93 113 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 FAM53AQ6NSI3 398 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-216ENST00000637968 STHQ8IWL8 128 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 RITA1Q96K30 269 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 FANCD2OSQ96PS1 177 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 SMIM2Q9BVW6 85 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 CEP250Q9BV73 2442 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 IGHV3-21A0A0B4J1V1 117 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 SPRY3O43610 288 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 FLVCR1-AS1Q8TAF5 88 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 AKAP6Q13023 2319 aa4.46□□□□□ -1.7
SCN1A-216ENST00000637968 SOCS3O14543 225 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 LINC01561Q8N1V8 128 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 OVOL2Q9BRP0 275 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 PROK2Q9HC23 129 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 GPR179Q6PRD1 2367 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 IGHV3-64A0A075B6Q5 118 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 TRBV6-1A0A0K0K1D8 114 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 F5H697 171 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 M0R1W7 72 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 APRG1Q8IVJ8 170 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 DAND5Q8N907 189 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 C8orf49Q96NF6 230 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 ADAMTS9Q9P2N4 1935 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 C17orf100A8MU93 164 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM178BH3BS89 294 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 GATA1P15976 413 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-216ENST00000637968 UBE2E1P51965 193 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 CD177Q8N6Q3 437 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM263Q8WUH6 116 aaKnown RBP4.45□□□□□ -1.7
SCN1A-216ENST00000637968 USF3Q68DE3 2245 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 IGKV1OR2-108A0A075B7D4 117 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 EFNA2O43921 213 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 SNRPD3P62318 126 aaKnown RBP4.45□□□□□ -1.7
SCN1A-216ENST00000637968 C4orf48Q5BLP8 95 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 HCP5Q6MZN7 132 aa4.45□□□□□ -1.7
SCN1A-216ENST00000637968 ZCCHC24Q8N2G6 241 aaKnown RBP4.45□□□□□ -1.7
SCN1A-216ENST00000637968 TRAV21A0A0B4J279 112 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 LST1O00453 97 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 SPRY2O43597 315 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 NDUFB3O43676 98 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DAZ4Q86SG3 579 aaKnown RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DAZ1Q9NQZ3 744 aaKnown RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 ELANEP08246 267 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 SUMO2P61956 95 aaKnown RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 PATE2Q6UY27 113 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 C2orf48Q96LS8 159 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 CXXC4Q9H2H0 198 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 THADAQ6YHU6 1953 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 LEPROTO15243 131 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 Q6JHZ5 121 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 C1orf159Q96HA4 380 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM141Q96I45 108 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 TIMM21Q9BVV7 248 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DOPEY2Q9Y3R5 2298 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DSCAML1Q8TD84 2053 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 SAA1P0DJI8 122 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DAZ2Q13117 558 aaKnown RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 ERCC8Q13216 396 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 DAZ3Q9NR90 486 aaKnown RBP4.44□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM14CQ9P0S9 112 aa4.44□□□□□ -1.7
SCN1A-216ENST00000637968 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-216ENST00000637968 CGB1A6NKQ9 187 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 ZNHIT1O43257 154 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms