RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PLECQ15149 4684 aaKnown RBP12.92□□□□□ -0.34
CLN3-259ENST00000637551 ALMS1Q8TCU4 4167 aa12.91□□□□□ -0.34
CLN3-259ENST00000637551 IFNA1P01562 189 aa12.91□□□□□ -0.34
CLN3-259ENST00000637551 ZNF767PQ75MW2 155 aa12.91□□□□□ -0.34
CLN3-259ENST00000637551 PRNTQ86SH4 94 aa12.91□□□□□ -0.34
CLN3-259ENST00000637551 FRAS1Q86XX4 4008 aa12.91□□□□□ -0.34
CLN3-259ENST00000637551 RYR1P21817 5038 aa12.9□□□□□ -0.34
CLN3-259ENST00000637551 GCGP01275 180 aa12.9□□□□□ -0.34
CLN3-259ENST00000637551 LTAP01374 205 aa12.9□□□□□ -0.34
CLN3-259ENST00000637551 AKR1C3P42330 323 aa12.9□□□□□ -0.34
CLN3-259ENST00000637551 C11orf52Q96A22 123 aa12.9□□□□□ -0.34
CLN3-259ENST00000637551 P0DMU3 169 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 FAM231AP0DMU4 169 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 FAM231CP0DMU5 169 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 BLOC1S1P78537 153 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 RASL10AQ92737 203 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 PTH2Q96A98 100 aa12.89□□□□□ -0.35
CLN3-259ENST00000637551 FABP5P3A8MUU1 101 aa12.88□□□□□ -0.35
CLN3-259ENST00000637551 PDE6DO43924 150 aa12.88□□□□□ -0.35
CLN3-259ENST00000637551 PIK3CD-AS1Q5SR53 167 aa12.88□□□□□ -0.35
CLN3-259ENST00000637551 SMIM12Q96EX1 92 aa12.88□□□□□ -0.35
CLN3-259ENST00000637551 IGHV3-16A0A0C4DH30 117 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 NDUFS6O75380 124 aaKnown RBP12.87□□□□□ -0.35
CLN3-259ENST00000637551 FAM3BP58499 235 aaPredicted RBP12.87□□□□□ -0.35
CLN3-259ENST00000637551 SLAQ13239 276 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 MUC21Q5SSG8 566 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 Q6ZTI0 123 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 TMEM183AQ8IXX5 376 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 LYPD6BQ8NI32 183 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 LINC00479Q96M42 142 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 C8orf49Q96NF6 230 aa12.87□□□□□ -0.35
CLN3-259ENST00000637551 TRGV2A0A075B6R0 118 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 TRGV1A0A0A0MS02 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 TRAV34A0A0B4J273 112 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GAGE12BA1L429 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 CIDEAO60543 219 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GAGE7O76087 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GAGE12FP0CL80 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GAGE12GP0CL81 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GAGE12IP0CL82 117 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 MEF2BQ02080 365 aaPredicted RBP12.86□□□□□ -0.35
CLN3-259ENST00000637551 DNLZQ5SXM8 178 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 FAM162BQ5T6X4 162 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 Q6ZQT7 251 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 SGK494Q96LW2 274 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 GNG13Q9P2W3 67 aa12.86□□□□□ -0.35
CLN3-259ENST00000637551 F5H768 121 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 M0R2P5 195 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 TYMSP04818 313 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 BCL2P10415 239 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 ZNF80P51504 273 aaPredicted RBP12.85□□□□□ -0.35
CLN3-259ENST00000637551 ZNF674Q2M3X9 581 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 RNF212Q495C1 297 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 TMEM88Q6PEY1 159 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 MDFICQ9P1T7 246 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 NAGKQ9UJ70 344 aa12.85□□□□□ -0.35
CLN3-259ENST00000637551 LY6G6CO95867 125 aa12.84□□□□□ -0.35
CLN3-259ENST00000637551 HTN3P15516 51 aa12.84□□□□□ -0.35
CLN3-259ENST00000637551 MLST8Q9BVC4 326 aa12.84□□□□□ -0.35
CLN3-259ENST00000637551 A0A1B0GV50 99 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 SCO2A0A1W2PP80 73 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 CXCL1P09341 107 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 CCL20P78556 96 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 ZC2HC1AQ96GY0 325 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 C9orf85Q96MD7 179 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 VAX2Q9UIW0 290 aa12.83□□□□□ -0.36
CLN3-259ENST00000637551 LINC01559Q495D7 138 aa12.82□□□□□ -0.36
CLN3-259ENST00000637551 ALKAL2Q6UX46 152 aa12.82□□□□□ -0.36
CLN3-259ENST00000637551 C11orf21Q9P2W6 132 aa12.82□□□□□ -0.36
CLN3-259ENST00000637551 TRAV4A0A0B4J268 109 aa12.81□□□□□ -0.36
CLN3-259ENST00000637551 POM121L12Q8N7R1 296 aa12.81□□□□□ -0.36
CLN3-259ENST00000637551 IL36BQ9NZH7 164 aa12.81□□□□□ -0.36
CLN3-259ENST00000637551 GNRH2O43555 120 aa12.8□□□□□ -0.36
CLN3-259ENST00000637551 RPL35P42766 123 aaKnown RBP12.8□□□□□ -0.36
CLN3-259ENST00000637551 BAGE2Q86Y30 109 aa12.8□□□□□ -0.36
CLN3-259ENST00000637551 BIN3Q9NQY0 253 aa12.8□□□□□ -0.36
CLN3-259ENST00000637551 PRO0255Q9UI72 69 aa12.8□□□□□ -0.36
CLN3-259ENST00000637551 IGKV3D-20A0A0C4DH25 116 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 TMEM250H0YL14 139 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 SH2D1AO60880 128 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 MED14OSP0DP75 135 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 HOXA5P20719 270 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 ASIPP42127 132 aa12.79□□□□□ -0.36
CLN3-259ENST00000637551 NKX2-5P52952 324 aaPredicted RBP12.79□□□□□ -0.36
CLN3-259ENST00000637551 MRPL16Q9NX20 251 aaKnown RBP12.79□□□□□ -0.36
CLN3-259ENST00000637551 TRAV26-1A0A087WT03 109 aa12.78□□□□□ -0.36
CLN3-259ENST00000637551 B4DEV8 164 aa12.78□□□□□ -0.36
CLN3-259ENST00000637551 KRBOX1C9JBD0 128 aa12.78□□□□□ -0.36
CLN3-259ENST00000637551 RNASE3P12724 160 aaKnown RBP12.78□□□□□ -0.36
CLN3-259ENST00000637551 CRIP1P50238 77 aa12.78□□□□□ -0.36
CLN3-259ENST00000637551 ORM1P02763 201 aa12.77□□□□□ -0.37
CLN3-259ENST00000637551 OR5I1Q13606 314 aa12.77□□□□□ -0.37
CLN3-259ENST00000637551 NACAE9PAV3 2078 aa12.77□□□□□ -0.37
CLN3-259ENST00000637551 S100A4P26447 101 aaKnown RBP12.76□□□□□ -0.37
CLN3-259ENST00000637551 ZNF876PQ49A33 203 aa12.76□□□□□ -0.37
CLN3-259ENST00000637551 A8MWV9 139 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 C9JCJ5 164 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 GNG4P50150 75 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 CCL18P55774 89 aa12.75□□□□□ -0.37
CLN3-259ENST00000637551 FHL2Q14192 279 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms