RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TMSB15BA0A087X1C1 80 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 C7orf71A4D174 169 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 M0R2Z0 102 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 WIPF1O43516 503 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 SPINK13Q1W4C9 94 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 SRD5A3Q9H8P0 318 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 AGRNO00468 2067 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 RPS10P46783 165 aaKnown RBP13.59□□□□□ -0.23
CLN3-254ENST00000637050 CBY1Q9Y3M2 126 aa13.59□□□□□ -0.23
CLN3-254ENST00000637050 C5orf52A6NGY3 159 aa13.58□□□□□ -0.24
CLN3-254ENST00000637050 GFI1BQ5VTD9 330 aa13.58□□□□□ -0.24
CLN3-254ENST00000637050 VWFP04275 2813 aa13.57□□□□□ -0.24
CLN3-254ENST00000637050 SPINK4O60575 86 aa13.57□□□□□ -0.24
CLN3-254ENST00000637050 ZNF324O75467 553 aaPredicted RBP13.57□□□□□ -0.24
CLN3-254ENST00000637050 IGLL1P15814 213 aa13.57□□□□□ -0.24
CLN3-254ENST00000637050 TRPT1Q86TN4 253 aaKnown RBP13.57□□□□□ -0.24
CLN3-254ENST00000637050 STHQ8IWL8 128 aa13.57□□□□□ -0.24
CLN3-254ENST00000637050 PGLYRP4Q96LB8 373 aa13.57□□□□□ -0.24
CLN3-254ENST00000637050 TRAV12-2A0A075B6T6 113 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 TRAV12-3A0A0B4J271 114 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 IGLC6P0CF74 106 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 CRXO43186 299 aaPredicted RBP13.56□□□□□ -0.24
CLN3-254ENST00000637050 FRMD6-AS1P0C7T7 363 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 DNLZQ5SXM8 178 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 MRPL54Q6P161 138 aaKnown RBP13.56□□□□□ -0.24
CLN3-254ENST00000637050 ATP5L2Q7Z4Y8 100 aa13.56□□□□□ -0.24
CLN3-254ENST00000637050 GRIFINA4D1Z8 144 aa13.55□□□□□ -0.24
CLN3-254ENST00000637050 RAB4AP20338 218 aa13.55□□□□□ -0.24
CLN3-254ENST00000637050 FXYD7P58549 80 aa13.55□□□□□ -0.24
CLN3-254ENST00000637050 ANXA2RQ3ZCQ2 193 aa13.55□□□□□ -0.24
CLN3-254ENST00000637050 WFDC10AQ9H1F0 79 aa13.55□□□□□ -0.24
CLN3-254ENST00000637050 CTRLP40313 264 aa13.54□□□□□ -0.24
CLN3-254ENST00000637050 SNRPEP62304 92 aaKnown RBP13.54□□□□□ -0.24
CLN3-254ENST00000637050 RASL11AQ6T310 242 aa13.54□□□□□ -0.24
CLN3-254ENST00000637050 LYZL1Q6UWQ5 148 aa13.54□□□□□ -0.24
CLN3-254ENST00000637050 FER1L6-AS1Q8NA97 138 aa13.54□□□□□ -0.24
CLN3-254ENST00000637050 NAGKQ9UJ70 344 aa13.54□□□□□ -0.24
CLN3-254ENST00000637050 A0A1B0GXF2 115 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 MUC21Q5SSG8 566 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 GTSCR1Q86UQ5 136 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 TRGC2P03986 189 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 TDRG1Q3Y452 100 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 COX19Q49B96 90 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 GNB1LQ9BYB4 327 aa13.53□□□□□ -0.24
CLN3-254ENST00000637050 A0A1B0GUT8 65 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 AMBPP02760 352 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 ARMS2P0C7Q2 107 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 FAM159AQ6UWV7 190 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 KCNS1Q96KK3 526 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 TPPP3Q9BW30 176 aa13.52□□□□□ -0.25
CLN3-254ENST00000637050 PHOX2AO14813 284 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 RBMY1A1P0DJD3 496 aaKnown RBP13.51□□□□□ -0.25
CLN3-254ENST00000637050 RBMY1CP0DJD4 496 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 HBBP68871 147 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 RBMY1FQ15415 496 aaKnown RBP13.51□□□□□ -0.25
CLN3-254ENST00000637050 ANKRD39Q53RE8 183 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 WDR73Q6P4I2 378 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 TMEM136Q6ZRR5 245 aa13.51□□□□□ -0.25
CLN3-254ENST00000637050 SSBP4Q9BWG4 385 aaPredicted RBP13.51□□□□□ -0.25
CLN3-254ENST00000637050 F2Z2F3 143 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 NUTF2P61970 127 aaKnown RBP13.5□□□□□ -0.25
CLN3-254ENST00000637050 BORCS7Q96B45 105 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 CNFNQ9BYD5 112 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 SNURFLB1AK76 121 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 GNRH2O43555 120 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 SNAI2O43623 268 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 MT-ND6P03923 174 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 OR5AL1P0C617 328 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 ASIPP42127 132 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 RIGQ13278 110 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 PRR31Q5SQ13 230 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 DEFB125Q8N687 156 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 C20orf144Q9BQM9 153 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 TRAPPC1Q9Y5R8 145 aa13.5□□□□□ -0.25
CLN3-254ENST00000637050 IGHV1OR15-1A0A075B7D0 117 aa13.49□□□□□ -0.25
CLN3-254ENST00000637050 CAMPP49913 170 aa13.49□□□□□ -0.25
CLN3-254ENST00000637050 A0A1B0GW15 77 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 INSP01308 110 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 HLA-DQA1P01909 254 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 MED14OSP0DP75 135 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 FABP9Q0Z7S8 132 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 Q8N1Y9 231 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 MDFIQ99750 246 aa13.48□□□□□ -0.25
CLN3-254ENST00000637050 STAB1Q9NY15 2570 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 H3BVH4 76 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 ZFP82Q8N141 532 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 XCL2Q9UBD3 114 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 MUC21A0A0G2JKD1 596 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 MUC21A0A140T8X8 626 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 GIG44P09565 113 aaPredicted RBP13.47□□□□□ -0.25
CLN3-254ENST00000637050 RNASE3P12724 160 aaKnown RBP13.47□□□□□ -0.25
CLN3-254ENST00000637050 OXLD1Q5BKU9 147 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 MORN3Q6PF18 240 aaPredicted RBP13.47□□□□□ -0.25
CLN3-254ENST00000637050 GATD1Q8NB37 220 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 FRZBQ92765 325 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 MRPL18Q9H0U6 180 aaKnown RBP13.47□□□□□ -0.25
CLN3-254ENST00000637050 SCRT2Q9NQ03 307 aa13.47□□□□□ -0.25
CLN3-254ENST00000637050 RPL35AP18077 110 aaKnown RBP13.46□□□□□ -0.26
CLN3-254ENST00000637050 NTF3P20783 257 aa13.46□□□□□ -0.26
CLN3-254ENST00000637050 S100A4P26447 101 aaKnown RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms