RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 A0A0G2JMM0 328 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 A0A1W2PPB8 328 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 KIR3DP1A8MWS1 328 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 IGF2P01344 180 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 IFNA7P01567 189 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 HIST1H3AP68431 136 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 MSMO1Q15800 293 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 DEFB135Q30KP9 77 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 EFCAB11Q9BUY7 163 aa-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 MAP2P11137 1827 aaKnown RBP-1.69□□□□□ -2.68
SCN1A-211ENST00000635893 TRANK1O15050 2925 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 TSC2P49815 1807 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 C3orf85A0A1B0GTC6 90 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 M0R036 132 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 ADGRL3Q9HAR2 1447 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 ATP6V1DQ9Y5K8 247 aa-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 COL14A1Q05707 1796 aaKnown RBP-1.7□□□□□ -2.68
SCN1A-211ENST00000635893 TNS1Q9HBL0 1735 aaKnown RBP-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 BOD1L1Q8NFC6 3051 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 DNAH10Q8IVF4 4471 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 LYPLA2O95372 231 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 C3orf62Q6ZUJ4 267 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 NKIRAS1Q9NYS0 192 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 TPRKBQ9Y3C4 175 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 NISCHQ9Y2I1 1504 aa-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 SIPA1L2Q9P2F8 1722 aaPredicted RBP-1.71□□□□□ -2.68
SCN1A-211ENST00000635893 CCDC144AA2RUR9 1427 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 TRPM1Q7Z4N2 1603 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 FAM25EA8MYX2 175 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 MCRIP1C9JLW8 97 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 BANF1O75531 89 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 CST7O76096 145 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 MAGOHP61326 146 aaKnown RBP-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 POU6F1Q14863 301 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 IZUMO2Q6UXV1 221 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 IFT20Q8IY31 132 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 TCTEX1D1Q8N7M0 179 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 OR4C12Q96R67 309 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 BPESC1Q9GZL8 116 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 ATMQ13315 3056 aa-1.72□□□□□ -2.68
SCN1A-211ENST00000635893 PDE4DIPQ5VU43 2346 aa-1.72□□□□□ -2.69
SCN1A-211ENST00000635893 N4BP2Q86UW6 1770 aaPredicted RBP-1.72□□□□□ -2.69
SCN1A-211ENST00000635893 ADGRG4Q8IZF6 3080 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 GVQW2A0A096LPI5 108 aaPredicted RBP-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 BBIP1A8MTZ0 92 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 C9JAW5 83 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 HIST1H2BKO60814 126 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 IGKCP01834 107 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 HIST1H2BJP06899 126 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 KRTAP19-6Q3LI70 58 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 TRAPPC5Q8IUR0 188 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 LLPHQ9BRT6 129 aaKnown RBP-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 CTNNBIP1Q9NSA3 81 aaPredicted RBP-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 PLXNA1Q9UIW2 1896 aa-1.73□□□□□ -2.69
SCN1A-211ENST00000635893 PLXNB2O15031 1838 aa-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 HMGB3O15347 200 aaKnown RBP-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 MT1BP07438 61 aa-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 DEFB1P60022 68 aa-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 TMEM97Q5BJF2 176 aa-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 TMEM229BQ8NBD8 167 aa-1.74□□□□□ -2.69
SCN1A-211ENST00000635893 CDK13Q14004 1512 aaKnown RBP-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 ANK1P16157 1881 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 TMEM30CPA0ZSE6 113 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 ATP5HO75947 161 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 TAF1AQ15573 450 aaPredicted RBP-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 IQCJQ1A5X6 159 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 LYPD5Q6UWN5 251 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 CCDC42Q96M95 316 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 CIB3Q96Q77 187 aaPredicted RBP-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 RREB1Q92766 1687 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 TLN2Q9Y4G6 2542 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 C10orf71Q711Q0 1435 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 PLXNA2O75051 1894 aa-1.75□□□□□ -2.69
SCN1A-211ENST00000635893 SIPA1L3O60292 1781 aaPredicted RBP-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 TRAV5A0A0B4J249 113 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 TPST1O60507 370 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 TRGC2P03986 189 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 OR5AK2Q8NH90 309 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 SIGMAR1Q99720 223 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 AGPAT4-IT1Q9H0P7 198 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 NUP210LQ5VU65 1888 aa-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 HELZP42694 1942 aaKnown RBP-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 BLMP54132 1417 aaPredicted RBP-1.76□□□□□ -2.69
SCN1A-211ENST00000635893 TRAV22A0A0B4J277 110 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 MT-ND6P03923 174 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 TPM3P06753 285 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 IL7P13232 177 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 FABP4P15090 132 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 HBBP68871 147 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 GPX7Q96SL4 187 aaPredicted RBP-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 BPTFQ12830 3046 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 FGD6Q6ZV73 1430 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 ZCCHC6Q5VYS8 1495 aaKnown RBP-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 KIAA1549LQ6ZVL6 1849 aa-1.77□□□□□ -2.69
SCN1A-211ENST00000635893 ARL5CA6NH57 179 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 ZNF815PA8K554 130 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 H3BNG1 76 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 CCKP06307 115 aa-1.78□□□□□ -2.69
SCN1A-211ENST00000635893 RPS17P08708 135 aaKnown RBP-1.78□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms