RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 CLPSL1A2RUU4 121 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 F8VRH5 84 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 IGHV4-59P01825 116 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 NPSP0C0P6 89 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 ZNF688P0C7X2 276 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 PSMB8P28062 276 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 CRYBA4P53673 196 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 DUX3Q96PT4 197 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 NBASA2RRP1 2371 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 NCR2O95944 276 aa3.48□□□□□ -1.85
SCN1A-210ENST00000635776 J3QKU1 62 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 SYNJ2BPP57105 145 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 BLCAPP62952 87 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 MUC21Q5SSG8 566 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 IGFL4Q6B9Z1 124 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 DNAJC30Q96LL9 226 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 CRIP1P50238 77 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 C4orf3Q8WVX3 66 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 TIMM17AQ99595 171 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 A0A087WX48 190 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 A0A0J9YX75 114 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 LGALS3P17931 250 aaKnown RBP3.47□□□□□ -1.85
SCN1A-210ENST00000635776 SRSF9Q13242 221 aaKnown RBP eCLIP3.47□□□□□ -1.85
SCN1A-210ENST00000635776 PLEKHB2Q96CS7 222 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 TMEM160Q9NX00 188 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 PTPRBP23467 1997 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 H3BRM9 83 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 CD33P20138 364 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 HOXD3P31249 432 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-210ENST00000635776 C18orf15Q96N68 181 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 CLUHP3Q96NS8 147 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 IGHV4OR15-8A0A075B7B6 117 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 A0A087WW49 117 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 K7EQG2 157 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 TRAV8-2A0A0B4J237 113 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 IGKV3D-20A0A0C4DH25 116 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 PRAC2D3DTV9 90 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 HLA-DMBP28068 263 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 ZC2HC1BQ5TFG8 222 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 STHQ8IWL8 128 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 C14orf178Q8N769 122 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-210ENST00000635776 ZNF80P51504 273 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-210ENST00000635776 APRG1Q8IVJ8 170 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 Q96MF0 132 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 TCTEX1D4Q5JR98 221 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 COX11Q9Y6N1 276 aa3.47□□□□□ -1.85
SCN1A-210ENST00000635776 FRMD6-AS1P0C7T7 363 aa3.46□□□□□ -1.85
SCN1A-210ENST00000635776 KIR3DS1Q14943 382 aa3.46□□□□□ -1.85
SCN1A-210ENST00000635776 HIST1H4GQ99525 98 aa3.46□□□□□ -1.85
SCN1A-210ENST00000635776 KLLNB2CW77 178 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 I3L3M4 83 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 UBE2V1Q13404 147 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 ZFAND2AQ8N6M9 145 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 CSTL1Q9H114 145 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 VCX2Q9H322 139 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 SCRT2Q9NQ03 307 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 RNF114Q9Y508 228 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 SNCGO76070 127 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 PMVKQ15126 192 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 MPV17L2Q567V2 206 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 LINC01587Q99440 93 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 YAE1D1Q9NRH1 226 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 MUC21A0A0G2JKD1 596 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 TRBV6-5A0A0K0K1A5 114 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 MUC21A0A140T8X8 626 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 IGHV4-31P0DP07 118 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 TCTAP57738 103 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 TRAV12-3A0A0B4J271 114 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 K7EP13 123 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 HOXA3O43365 443 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-210ENST00000635776 CIRBPQ14011 172 aaKnown RBP3.46□□□□□ -1.86
SCN1A-210ENST00000635776 hDV102S1A0JD36 115 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 SDHAF1A6NFY7 115 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 LINC01546A6NGU7 62 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 FAM74A4Q5TZK3 123 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 UNQ9165/PRO28630Q6UXU0 137 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 PTH2Q96A98 100 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 TOMM6Q96B49 74 aa3.46□□□□□ -1.86
SCN1A-210ENST00000635776 TSSC4Q9Y5U2 329 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-210ENST00000635776 RBX1P62877 108 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 CFHR3Q02985 330 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 KLHL30-AS1Q8NEE0 82 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 ROS1P08922 2347 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 LINC01548A6NM66 108 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 ZNF876PQ49A33 203 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 MORN3Q6PF18 240 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-210ENST00000635776 PCNX1Q96RV3 2341 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 SOCS3O14543 225 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 RRN3P1Q2M238 152 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 NEGR1Q7Z3B1 354 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 M0R2P5 195 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 NXPH4O95158 308 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 DEFB131AP59861 70 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 RPL36AP83881 106 aaKnown RBP3.45□□□□□ -1.86
SCN1A-210ENST00000635776 RPL36ALQ969Q0 106 aaKnown RBP3.45□□□□□ -1.86
SCN1A-210ENST00000635776 TET2Q6N021 2002 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-210ENST00000635776 KLK15Q9H2R5 256 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-210ENST00000635776 TRAV8-6A0A0B4J262 113 aa3.45□□□□□ -1.86
SCN1A-210ENST00000635776 TMEM238C9JI98 176 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms