RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ATP5G2Q06055 141 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 ZNF843Q8N446 348 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 IFI27L1Q96BM0 104 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 KLF12Q9Y4X4 402 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 AGRNO00468 2067 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 ODF3BA8MYP8 253 aa11.23□□□□□ -0.61
SHROOM1-208ENST00000617339 ORM1P02763 201 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 UBE2E1P51965 193 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 SFTA2Q6UW10 78 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 OR4X2Q8NGF9 303 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 ZNF492Q9P255 531 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 IGKV2D-26A0A0A0MRZ7 120 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 H3BMG7 143 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 CTSGP08311 255 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 OR9G4Q8NGQ1 327 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 ITPR2Q14571 2701 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 PRSS1P07477 247 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 CT83Q5H943 113 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 GTSCR1Q86UQ5 136 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 GLMPQ8WWB7 406 aa11.22□□□□□ -0.61
SHROOM1-208ENST00000617339 KRTAP10-9P60411 292 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 DEFB104AQ8WTQ1 72 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 ATP6V0BQ99437 205 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 SHANK2-AS3Q9BTD1 123 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 PSG8Q9UQ74 426 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 TRBV19A0A075B6N1 114 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 DPF1Q92782 380 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 SRSF8Q9BRL6 282 aaKnown RBP11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 GFRA4Q9GZZ7 299 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 YAE1D1Q9NRH1 226 aa11.21□□□□□ -0.61
SHROOM1-208ENST00000617339 IGLV11-55A0A075B6I3 123 aa11.21□□□□□ -0.62
SHROOM1-208ENST00000617339 LYZL1Q6UWQ5 148 aa11.21□□□□□ -0.62
SHROOM1-208ENST00000617339 VGLL1Q99990 258 aa11.21□□□□□ -0.62
SHROOM1-208ENST00000617339 TRBV12-3P01733 135 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 INSL3P51460 131 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 TRAV26-1A0A087WT03 109 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 IGHV1-69DA0A0B4J2H0 117 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 INS-IGF2F8WCM5 200 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 IGHV1-69P01742 117 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 EGR2P11161 476 aaPredicted RBP11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 CKS2P33552 79 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 TEP1Q99973 2627 aaKnown RBP11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 HBDP02042 147 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 MINOS1Q5TGZ0 78 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 C16orf92Q96LL3 132 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 MINOS1-NBL1R4GNA1 71 aa11.2□□□□□ -0.62
SHROOM1-208ENST00000617339 LGALS9BQ3B8N2 356 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 CD300EQ496F6 205 aaPredicted RBP11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 LGALS9CQ6DKI2 356 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 CHAC1Q9BUX1 264 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 TRAV41A0A0B4J266 112 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 PRAC2D3DTV9 90 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 NPIPB6E9PJ23 425 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 EVI2AP22794 236 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 NPBQ8NG41 125 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 OTORQ9NRC9 128 aa11.19□□□□□ -0.62
SHROOM1-208ENST00000617339 NDUFA3O95167 84 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 AVPP01185 164 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 METTL26Q96S19 204 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 KLK15Q9H2R5 256 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 NPYP01303 97 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 IGHV4-59P01825 116 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 SMIM17P0DL12 118 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 Q6ZQT7 251 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 F8W735 103 aaPredicted RBP11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 TWIST1Q15672 202 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 ORMDL3Q8N138 153 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 EEF1AKMT3Q96AZ1 226 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 RNF5Q99942 180 aa11.18□□□□□ -0.62
SHROOM1-208ENST00000617339 ARL3P36405 182 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 SIGLEC15Q6ZMC9 328 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 C10orf105Q8TEF2 133 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 SPAG8Q99932 426 aaPredicted RBP11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 NIPBLQ6KC79 2804 aaeCLIP11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 S100A4P26447 101 aaKnown RBP11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 MRPL51Q4U2R6 128 aaKnown RBP11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 MOB4Q9Y3A3 225 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 H3BRN7 92 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 IGLV2-11P01706 119 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 TMEM160Q9NX00 188 aa11.17□□□□□ -0.62
SHROOM1-208ENST00000617339 CRIP1P50238 77 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 C10orf99Q6UWK7 81 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 FOXC2Q99958 501 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 GAS8-AS1O95177 125 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 PVRIGQ6DKI7 326 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 ZNF479Q96JC4 524 aa11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 SPANXB1Q9NS25 103 aaPredicted RBP11.16□□□□□ -0.62
SHROOM1-208ENST00000617339 TMEM189A5PLL7 270 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 J3QKU1 62 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 RPL7P18124 248 aaKnown RBP11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 LEPP41159 167 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 DEFB112Q30KQ8 113 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 APCP25054 2843 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 TTC9CQ8N5M4 171 aa11.15□□□□□ -0.62
SHROOM1-208ENST00000617339 A0A1B0GWB2 263 aa11.15□□□□□ -0.63
SHROOM1-208ENST00000617339 CRYBA4P53673 196 aa11.15□□□□□ -0.63
SHROOM1-208ENST00000617339 ZC2HC1BQ5TFG8 222 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 FAM104BQ5XKR9 115 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 MSRB1Q9NZV6 116 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 UFC1Q9Y3C8 167 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 190.3 ms