RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CRYGAP11844 174 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 Q5XG85 94 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 LINC00477Q96M19 166 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 ZNRD1Q9P1U0 126 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 PRO0628Q9UI54 55 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 FAM240AA0A1B0GVK7 77 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 H3BMM0 161 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 ATP5G1P05496 136 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 MALP21145 153 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 UBE2WQ96B02 151 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 SCNM1Q9BWG6 230 aa7.96□□□□□ -1.13
VPS39-214ENST00000614932 A0A0G2JNJ9 132 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 SMKR1H3BMG3 65 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 OVOL1O14753 267 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 MRPS12O15235 138 aaKnown RBP7.96□□□□□ -1.14
VPS39-214ENST00000614932 COX7CP15954 63 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 ZNF134P52741 427 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 CEMP1Q6PRD7 247 aaPredicted RBP7.96□□□□□ -1.14
VPS39-214ENST00000614932 IGFL3Q6UXB1 125 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 SIGLEC15Q6ZMC9 328 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 Q9UFV3 132 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 SPTBN4Q9H254 2564 aa7.96□□□□□ -1.14
VPS39-214ENST00000614932 TINCRA0A1B0GVN0 87 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 ZNF785A8K8V0 405 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 NDUFA3O95167 84 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 PATE2Q6UY27 113 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 DTX2Q86UW9 622 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 CCL13Q99616 98 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 FOXA2Q9Y261 457 aaPredicted RBP7.95□□□□□ -1.14
VPS39-214ENST00000614932 PTPRQQ9UMZ3 2332 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 SPINT2O43291 252 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 HLA-DMBP28068 263 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 GFRALQ6UXV0 394 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 C1orf229Q6ZS94 237 aaPredicted RBP7.95□□□□□ -1.14
VPS39-214ENST00000614932 FAM216BQ8N7L0 139 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 TMEM14BQ9NUH8 114 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 LINC00527Q9UJ94 153 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 DSCAMO60469 2012 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 ARFGEF3Q5TH69 2177 aa7.95□□□□□ -1.14
VPS39-214ENST00000614932 SRRM5B3KS81 715 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 PROP1O75360 226 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 MLANAQ16655 118 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 SCGB1D4Q6XE38 83 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 C1orf43Q9BWL3 253 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 COL6A6A6NMZ7 2263 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 FSTL3O95633 263 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 CD40P25942 277 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 NBL1P41271 181 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 PRNTQ86SH4 94 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 NXT2Q9NPJ8 142 aaKnown RBP7.94□□□□□ -1.14
VPS39-214ENST00000614932 COL12A1Q99715 3063 aa7.94□□□□□ -1.14
VPS39-214ENST00000614932 IGHV1-46P01743 117 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 TRACP01848 142 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 Q8NA96 180 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 JPT2Q9H910 190 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 PRO1854Q9UHT4 67 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 CFC1BP0CG36 223 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 CFC1P0CG37 223 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 CNTFRP26992 372 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 TMEM258P61165 79 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 PRB3Q04118 309 aaPredicted RBP7.93□□□□□ -1.14
VPS39-214ENST00000614932 CD69Q07108 199 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 LINC01620Q4KN68 170 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 LYZL1Q6UWQ5 148 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 LINC00305Q7Z4B0 112 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 FAM90A1Q86YD7 464 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 S1PR3Q99500 378 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 ZNF256Q9Y2P7 627 aaPredicted RBP7.93□□□□□ -1.14
VPS39-214ENST00000614932 RS1O15537 224 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 PLAUP00749 431 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 EDN2P20800 178 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 Q9H3A6 140 aa7.93□□□□□ -1.14
VPS39-214ENST00000614932 DCHS2Q6V1P9 2916 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 CHD8Q9HCK8 2581 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 TRBV10-2A0A0K0K1G8 114 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 ZNF815PA8K554 130 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 OXTP01178 125 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 BSPH1Q075Z2 132 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 ATXN8Q156A1 80 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 C2orf83Q53S99 150 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 INS-IGF2F8WCM5 200 aa7.92□□□□□ -1.14
VPS39-214ENST00000614932 ABCA4P78363 2273 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 IGLV2-11P01706 119 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 P0DMU3 169 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 FAM231AP0DMU4 169 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 FAM231CP0DMU5 169 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 CCL17Q92583 94 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 PLEKHB2Q96CS7 222 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 TRBV6-1A0A0K0K1D8 114 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 hADV29S1A0JD25 119 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 H7C1H1 209 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 Q71RC1 249 aaPredicted RBP7.91□□□□□ -1.14
VPS39-214ENST00000614932 Q8N8P6 123 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 SLC25A39Q9BZJ4 359 aaPredicted RBP7.91□□□□□ -1.14
VPS39-214ENST00000614932 RNF7Q9UBF6 113 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 NCOR2Q9Y618 2525 aa7.91□□□□□ -1.14
VPS39-214ENST00000614932 ASH1LQ9NR48 2969 aaKnown RBP7.9□□□□□ -1.14
VPS39-214ENST00000614932 F8VRH5 84 aa7.9□□□□□ -1.14
VPS39-214ENST00000614932 DLX1P56177 255 aa7.9□□□□□ -1.14
VPS39-214ENST00000614932 TMEM170BQ5T4T1 132 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms