RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TRAV12-3A0A0B4J271 114 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 XKRY2A2RUG3 117 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 PHOX2AO14813 284 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 FXYD7P58549 80 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 A0A1B0GXF2 115 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 GRIFINA4D1Z8 144 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 RBMY1A1P0DJD3 496 aaKnown RBP10.48□□□□□ -0.73
USP39-220ENST00000613444 RBMY1CP0DJD4 496 aa10.48□□□□□ -0.73
USP39-220ENST00000613444 RBMY1FQ15415 496 aaKnown RBP10.48□□□□□ -0.73
USP39-220ENST00000613444 MRPL54Q6P161 138 aaKnown RBP10.48□□□□□ -0.73
USP39-220ENST00000613444 ANXA2RQ3ZCQ2 193 aa10.47□□□□□ -0.73
USP39-220ENST00000613444 STHQ8IWL8 128 aa10.47□□□□□ -0.73
USP39-220ENST00000613444 TMA7Q9Y2S6 64 aaKnown RBP10.47□□□□□ -0.73
USP39-220ENST00000613444 CTRLP40313 264 aa10.46□□□□□ -0.73
USP39-220ENST00000613444 MUC21Q5SSG8 566 aa10.46□□□□□ -0.73
USP39-220ENST00000613444 NAGKQ9UJ70 344 aa10.46□□□□□ -0.73
USP39-220ENST00000613444 DNAH3Q8TD57 4116 aa10.46□□□□□ -0.73
USP39-220ENST00000613444 TRGC2P03986 189 aa10.46□□□□□ -0.74
USP39-220ENST00000613444 ARMS2P0C7Q2 107 aa10.46□□□□□ -0.74
USP39-220ENST00000613444 LYZL1Q6UWQ5 148 aa10.46□□□□□ -0.74
USP39-220ENST00000613444 ATP5L2Q7Z4Y8 100 aa10.46□□□□□ -0.74
USP39-220ENST00000613444 MDFIQ99750 246 aa10.46□□□□□ -0.74
USP39-220ENST00000613444 TDRG1Q3Y452 100 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 FER1L6-AS1Q8NA97 138 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 MUC4Q99102 2169 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 RASL11AQ6T310 242 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 TMEM136Q6ZRR5 245 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 DEFB125Q8N687 156 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 SSBP4Q9BWG4 385 aaPredicted RBP10.45□□□□□ -0.74
USP39-220ENST00000613444 CNFNQ9BYD5 112 aa10.45□□□□□ -0.74
USP39-220ENST00000613444 A0A1B0GUT8 65 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 GNRH2O43555 120 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
USP39-220ENST00000613444 DNLZQ5SXM8 178 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 Q8N1Y9 231 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 TPPP3Q9BW30 176 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 GNB1LQ9BYB4 327 aa10.44□□□□□ -0.74
USP39-220ENST00000613444 GTSCR1Q86UQ5 136 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 SNAI2O43623 268 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 HBBP68871 147 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 OXLD1Q5BKU9 147 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 FAM159AQ6UWV7 190 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 TP53TG3Q9ULZ0 132 aa10.43□□□□□ -0.74
USP39-220ENST00000613444 MUC21A0A0G2JKD1 596 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 MUC21A0A140T8X8 626 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 SNURFLB1AK76 121 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 OR5AL1P0C617 328 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 RNASE3P12724 160 aaKnown RBP10.42□□□□□ -0.74
USP39-220ENST00000613444 PRR31Q5SQ13 230 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 LURAP1LQ8IV03 231 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 IGHV1OR15-1A0A075B7D0 117 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 C1orf196B1AJZ1 125 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 F2Z2F3 143 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 CAMPP49913 170 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 FABP9Q0Z7S8 132 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 COX19Q49B96 90 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 WDR73Q6P4I2 378 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 FRZBQ92765 325 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 KCNS1Q96KK3 526 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 SCRT2Q9NQ03 307 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 XCL2Q9UBD3 114 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 TRAPPC1Q9Y5R8 145 aa10.42□□□□□ -0.74
USP39-220ENST00000613444 H3BVH4 76 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 AMBPP02760 352 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 ZFP82Q8N141 532 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 GATD1Q8NB37 220 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 INSP01308 110 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 RPL35AP18077 110 aaKnown RBP10.41□□□□□ -0.74
USP39-220ENST00000613444 ASIPP42127 132 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 NUTF2P61970 127 aaKnown RBP10.41□□□□□ -0.74
USP39-220ENST00000613444 RIGQ13278 110 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 OR10AG1Q8NH19 301 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 C20orf144Q9BQM9 153 aa10.41□□□□□ -0.74
USP39-220ENST00000613444 MRPL18Q9H0U6 180 aaKnown RBP10.41□□□□□ -0.74
USP39-220ENST00000613444 IGHV3-16A0A0C4DH30 117 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 MT-ND6P03923 174 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 MED14OSP0DP75 135 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 NTF3P20783 257 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 EGFEM1PQ0D2K5 195 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 C1orf158Q8N1D5 194 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 MSRB1Q9NZV6 116 aa10.4□□□□□ -0.74
USP39-220ENST00000613444 IGHV4-4A0A075B6R2 117 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 A0A1B0GW15 77 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 HLA-DQA1P01909 254 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 KRTAP10-11P60412 298 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 SLAQ13239 276 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 LINC00467Q9BRT7 94 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 MDFICQ9P1T7 246 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 SPRY2O43597 315 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 PRM2P04554 102 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 RAB4BP61018 213 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 SSTP61278 116 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 ZNF493Q6ZR52 646 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 CSNK1G2-AS1Q8NCQ2 148 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 BORCS7Q96B45 105 aa10.39□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BKO60814 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BJP06899 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 TRGC1P0CF51 173 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BOP23527 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 S100A4P26447 101 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms