RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 IQCF2Q8IXL9 164 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 SYT8Q8NBV8 401 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 MRPL32Q9BYC8 188 aaKnown RBP4.29□□□□□ -1.72
CUX1-220ENST00000607092 GSN-AS1Q9NRJ2 163 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 LYRM2Q9NU23 88 aaPredicted RBP4.29□□□□□ -1.72
CUX1-220ENST00000607092 RCL1Q9Y2P8 373 aaKnown RBP4.29□□□□□ -1.72
CUX1-220ENST00000607092 TIMM9Q9Y5J7 89 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 TRGV4A0A0C4DH28 118 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 KLLNB2CW77 178 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 CIDEAO60543 219 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 CRISP2P16562 243 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 MALP21145 153 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 SULT1A2P50226 295 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 CRYBA4P53673 196 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 TIRAPP58753 221 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 SLC38A11Q08AI6 406 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 ATP6V1FQ16864 119 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 RPL7L1Q6DKI1 246 aaKnown RBP4.28□□□□□ -1.72
CUX1-220ENST00000607092 COMMD7Q86VX2 200 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 STX12Q86Y82 276 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 C11orf72Q8NBR9 251 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 SPXQ9BT56 116 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 TM2D2Q9BX73 214 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 PARD6GQ9BYG4 376 aaPredicted RBP4.28□□□□□ -1.72
CUX1-220ENST00000607092 SLC39A9Q9NUM3 307 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 TMEM14CQ9P0S9 112 aa4.28□□□□□ -1.72
CUX1-220ENST00000607092 TRGV11A0A075B6L2 103 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 TRBV19A0A075B6N1 114 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 IGHV1OR15-1A0A075B7D0 117 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 TRAV8-6A0A0B4J262 113 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 FAM24AA6NFZ4 105 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 PRAC2D3DTV9 90 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 J3KRW8 73 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 SLC17A3O00476 420 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 CRYGDP07320 174 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 RNASE4P34096 147 aaKnown RBP4.27□□□□□ -1.73
CUX1-220ENST00000607092 CSN1S1P47710 185 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 RPL29P47914 159 aaKnown RBP4.27□□□□□ -1.73
CUX1-220ENST00000607092 SULT1A1P50225 295 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 CAV2P51636 162 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 KRTAP10-1P60331 282 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 HBG1P69891 147 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 HBG2P69892 147 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 NHLH2Q02577 135 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 DPPA3Q6W0C5 159 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 C9orf47Q6ZRZ4 202 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 LYPD6BQ8NI32 183 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 DEFB104AQ8WTQ1 72 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 TMEM37Q8WXS4 190 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 ATP5SQ99766 215 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 SMDT1Q9H4I9 107 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 KCNIP2Q9NS61 270 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 UQCC1Q9NVA1 299 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 KLF12Q9Y4X4 402 aa4.27□□□□□ -1.73
CUX1-220ENST00000607092 IGHV3-38A0A0C4DH36 116 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 IGSF23A1L1A6 192 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 RBAKDNA6NC62 111 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 H3BQ15 152 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 SMR3BP02814 79 aaPredicted RBP4.26□□□□□ -1.73
CUX1-220ENST00000607092 PFN1P07737 140 aaKnown RBP4.26□□□□□ -1.73
CUX1-220ENST00000607092 SERF2P84101 59 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 FHL2Q14192 279 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 LAGE3Q14657 143 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 OR10G4Q8NGN3 311 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 SCGB1C1Q8TD33 95 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 TMED6Q8WW62 240 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 FAM19A4Q96LR4 140 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 C8orf49Q96NF6 230 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 MGST2Q99735 147 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 PSMG3Q9BT73 122 aaPredicted RBP4.26□□□□□ -1.73
CUX1-220ENST00000607092 WFDC1Q9HC57 220 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 TP53TG3Q9ULZ0 132 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 LENEPQ9Y5L5 61 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 COX11Q9Y6N1 276 aa4.26□□□□□ -1.73
CUX1-220ENST00000607092 KRTAP29-1A8MX34 341 aaPredicted RBP4.25□□□□□ -1.73
CUX1-220ENST00000607092 K7EQD1 137 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 CST7O76096 145 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 IGHV3-53P01767 116 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 GYPEP15421 78 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 PPT1P50897 306 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 ZNF138P52744 262 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 BTN1A1Q13410 526 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 LINC01556Q5JQF7 62 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 UBR4Q5T4S7 5183 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 MORN5Q5VZ52 161 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 FAM159AQ6UWV7 190 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 Q8N814 137 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 OR5C1Q8NGR4 320 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 RASL10AQ92737 203 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 C1orf43Q9BWL3 253 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 AGPAT4-IT1Q9H0P7 198 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 MRPL16Q9NX20 251 aaKnown RBP4.25□□□□□ -1.73
CUX1-220ENST00000607092 WDR83OSQ9Y284 106 aa4.25□□□□□ -1.73
CUX1-220ENST00000607092 TRAV8-3A0A0A6YYJ7 113 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 TRAV1-1A0A0B4J248 108 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 TRAV4A0A0B4J268 109 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 IBA57-AS1B1ANH7 110 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 H3BTX0 84 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 M0R3E3 92 aa4.24□□□□□ -1.73
CUX1-220ENST00000607092 MBP02144 154 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms