RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 LAGE3Q14657 143 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 GTSCR1Q86UQ5 136 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 RAB37Q96AX2 223 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 IGHV4-38-2P0DP08 117 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 CRIP2P52943 208 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 ZFAND2AQ8N6M9 145 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 ATP6V0BQ99437 205 aa15.37■□□□□ 0.05
SHKBP1-225ENST00000600733 GAGE10A6NGK3 116 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 DPM2O94777 84 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 CDKN1BP46527 198 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 ZC2HC1BQ5TFG8 222 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 AP1S3Q96PC3 154 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 TMEM160Q9NX00 188 aa15.36■□□□□ 0.05
SHKBP1-225ENST00000600733 PRSS47A8MTI9 375 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 M0R381 172 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 ATP5LO75964 103 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 LCNL1Q6ZST4 164 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 KLK15Q9H2R5 256 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 MRPL35Q9NZE8 188 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 SPG11Q96JI7 2443 aa15.35■□□□□ 0.05
SHKBP1-225ENST00000600733 IGKV3-7A0A075B6H7 116 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 SOCS3O14543 225 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 RPL11P62913 178 aaKnown RBP15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 OCIAD2Q56VL3 154 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 LENEPQ9Y5L5 61 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 A0A0G2JLM5 398 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 NDUFA4O00483 81 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 MYOZ3Q8TDC0 251 aa15.34■□□□□ 0.05
SHKBP1-225ENST00000600733 F6UB75 175 aa15.33■□□□□ 0.05
SHKBP1-225ENST00000600733 OR10J6PQ8NGY7 276 aa15.33■□□□□ 0.05
SHKBP1-225ENST00000600733 LINC00477Q96M19 166 aa15.33■□□□□ 0.05
SHKBP1-225ENST00000600733 Q6ZS46 218 aa15.33■□□□□ 0.04
SHKBP1-225ENST00000600733 MEGF9Q9H1U4 602 aa15.33■□□□□ 0.04
SHKBP1-225ENST00000600733 SMPXQ9UHP9 88 aa15.33■□□□□ 0.04
SHKBP1-225ENST00000600733 H3BUX3 64 aa15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 UFSP1Q6NVU6 142 aa15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 GCSHP23434 173 aa15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 BLCAPP62952 87 aa15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 SRSF1Q07955 248 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 MRAP2Q96G30 205 aa15.32■□□□□ 0.04
SHKBP1-225ENST00000600733 TRAV21A0A0B4J279 112 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 PF4V1P10720 104 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 S100A4P26447 101 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 FXYD2P54710 66 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 PIMREGQ9BSJ6 248 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 CHAC1Q9BUX1 264 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 SMIM2Q9BVW6 85 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 TRBV25-1A0A075B6N4 114 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 OVOL1O14753 267 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 ANXA2RQ3ZCQ2 193 aa15.31■□□□□ 0.04
SHKBP1-225ENST00000600733 CRYBG3Q68DQ2 2970 aa15.3■□□□□ 0.04
SHKBP1-225ENST00000600733 IGHG2P01859 326 aa15.3■□□□□ 0.04
SHKBP1-225ENST00000600733 RNASE4P34096 147 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-225ENST00000600733 PSMG4Q5JS54 123 aa15.3■□□□□ 0.04
SHKBP1-225ENST00000600733 C14orf178Q8N769 122 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-225ENST00000600733 GTF2H5Q6ZYL4 71 aa15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 RASL10AQ92737 203 aa15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 HIGD1BQ9P298 99 aa15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.29■□□□□ 0.043e-7■■□□□ 13.4
SHKBP1-225ENST00000600733 RPL39LQ96EH5 51 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 PRORYQ9H606 182 aa15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 PHLDA3Q9Y5J5 127 aa15.29■□□□□ 0.04
SHKBP1-225ENST00000600733 A0A087WX48 190 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 ASIPP42127 132 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 USMG5Q96IX5 58 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 K7EP34 96 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 GNRH2O43555 120 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 SRD5A1P18405 259 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 MAPKAPK5-AS1Q8N8E1 139 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 C10orf105Q8TEF2 133 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 CCL19Q99731 98 aa15.28■□□□□ 0.04
SHKBP1-225ENST00000600733 CFAP46Q8IYW2 2715 aa15.27■□□□□ 0.04
SHKBP1-225ENST00000600733 A6NDX4 124 aa15.27■□□□□ 0.04
SHKBP1-225ENST00000600733 SUMO2P61956 95 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-225ENST00000600733 RHPN1-AS1Q9BWJ2 59 aa15.27■□□□□ 0.04
SHKBP1-225ENST00000600733 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.27■□□□□ 0.03
SHKBP1-225ENST00000600733 EDN2P20800 178 aa15.27■□□□□ 0.03
SHKBP1-225ENST00000600733 FAM19A4Q96LR4 140 aa15.27■□□□□ 0.03
SHKBP1-225ENST00000600733 A0A1W2PPM0 123 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 K7ERJ3 54 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 MGPP08493 103 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 DPH3P1Q9H4G8 78 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 PKD1L2Q7Z442 2459 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 IGHV4-30-2A0A087WSY4 118 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 K7EMI3 77 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 SPOCK3Q9BQ16 436 aa15.26■□□□□ 0.03
SHKBP1-225ENST00000600733 SMIM13P0DJ93 91 aa15.25■□□□□ 0.03
SHKBP1-225ENST00000600733 FLNCQ14315 2725 aa15.25■□□□□ 0.03
SHKBP1-225ENST00000600733 CSMD2Q7Z408 3487 aa15.25■□□□□ 0.03
SHKBP1-225ENST00000600733 H3BUA1 57 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 RNASE3P12724 160 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 MUC4Q99102 2169 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 VPS25Q9BRG1 176 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 CSPG4Q6UVK1 2322 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 SCGB3A1Q96QR1 104 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 SPCS1Q9Y6A9 102 aa15.24■□□□□ 0.03
SHKBP1-225ENST00000600733 RNF223E7ERA6 249 aa15.23■□□□□ 0.03
SHKBP1-225ENST00000600733 SAP30O75446 220 aa15.23■□□□□ 0.03
SHKBP1-225ENST00000600733 BRI3O95415 125 aa15.23■□□□□ 0.03
SHKBP1-225ENST00000600733 PLNP26678 52 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms