RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TREM1Q9NP99 234 aa11.93□□□□□ -0.5
SHKBP1-223ENST00000600552 LENEPQ9Y5L5 61 aa11.93□□□□□ -0.5
SHKBP1-223ENST00000600552 TRAV4A0A0B4J268 109 aa11.92□□□□□ -0.5
SHKBP1-223ENST00000600552 C9JCJ5 164 aa11.92□□□□□ -0.5
SHKBP1-223ENST00000600552 M0R2P5 195 aa11.92□□□□□ -0.5
SHKBP1-223ENST00000600552 CRYGDP07320 174 aa11.92□□□□□ -0.5
SHKBP1-223ENST00000600552 RAB2AP61019 212 aa11.92□□□□□ -0.5
SHKBP1-223ENST00000600552 TRAV21A0A0B4J279 112 aa11.91□□□□□ -0.5
SHKBP1-223ENST00000600552 TYMSP04818 313 aa11.91□□□□□ -0.5
SHKBP1-223ENST00000600552 PPT1P50897 306 aa11.91□□□□□ -0.5
SHKBP1-223ENST00000600552 SDF2L1Q9HCN8 221 aa11.91□□□□□ -0.5
SHKBP1-223ENST00000600552 IGHV3-73A0A0B4J1V6 119 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 KRTAP10-1P60331 282 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 OR10G9Q8NGN4 311 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 OR10G7Q8NGN6 311 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 TVP23CQ96ET8 276 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 MARVELD1Q9BSK0 173 aa11.9□□□□□ -0.5
SHKBP1-223ENST00000600552 PSCAO43653 123 aa11.89□□□□□ -0.51
SHKBP1-223ENST00000600552 CDPF1Q6NVV7 123 aa11.89□□□□□ -0.51
SHKBP1-223ENST00000600552 TMED6Q8WW62 240 aa11.89□□□□□ -0.51
SHKBP1-223ENST00000600552 ASB13Q8WXK3 278 aa11.89□□□□□ -0.51
SHKBP1-223ENST00000600552 INAFM2P0DMQ5 153 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 XGP55808 180 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 DEFA1P59665 94 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 DEFA3P59666 94 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 TDRG1Q3Y452 100 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 PQLC2Q6ZP29 291 aa11.88□□□□□ -0.51
SHKBP1-223ENST00000600552 SMR3BP02814 79 aaPredicted RBP11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 ARL14EPLP0DKL9 152 aa11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 HAMPP81172 84 aa11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 KCNS1Q96KK3 526 aa11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 NDFIP1Q9BT67 221 aa11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 Q9HAA7 133 aa11.87□□□□□ -0.51
SHKBP1-223ENST00000600552 FBLL1A6NHQ2 334 aaKnown RBP11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 IGHV3-30P01768 117 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 IGHV3-33P01772 117 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 IGHV3-30-3P0DP02 117 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 IGHV3-30-5P0DP03 117 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 GCSHP23434 173 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 OR10J3Q5JRS4 329 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 HSD17B11Q8NBQ5 300 aa11.86□□□□□ -0.51
SHKBP1-223ENST00000600552 IGHV3-38A0A0C4DH36 116 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 GATA1P15976 413 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 CDC34P49427 236 aaPredicted RBP11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 ZNF876PQ49A33 203 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 Q5VSD8 79 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 SH2D6Q7Z4S9 175 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 C10orf126Q8N4M7 172 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 FRZBQ92765 325 aa11.85□□□□□ -0.51
SHKBP1-223ENST00000600552 TRAV8-6A0A0B4J262 113 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 GCGP01275 180 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 ZNF80P51504 273 aaPredicted RBP11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 PRNTQ86SH4 94 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 SLC25A29Q8N8R3 303 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 TMEM75Q8N9X5 138 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 PRADC1Q9BSG0 188 aa11.84□□□□□ -0.51
SHKBP1-223ENST00000600552 IGLV5-52A0A0A0MRZ9 124 aa11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 K7EP13 123 aa11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 PFN1P07737 140 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 DPPA3Q6W0C5 159 aa11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 C11orf21Q9P2W6 132 aa11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 PSG8Q9UQ74 426 aa11.83□□□□□ -0.52
SHKBP1-223ENST00000600552 K7EQM0 130 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 RS1O15537 224 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 TCRAP04437 139 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 GCHFRP30047 84 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 CFAP126Q5VTH2 177 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 RAB24Q969Q5 203 aa11.82□□□□□ -0.52
SHKBP1-223ENST00000600552 PGPEP1LA6NFU8 196 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 A6NHS1 94 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 TAAR5O14804 337 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 SUMO1P63165 101 aaKnown RBP11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 ZFP69Q49AA0 526 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 ARL6IP6Q8N6S5 226 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 C5orf17Q8NAS9 161 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 ALG5Q9Y673 324 aa11.81□□□□□ -0.52
SHKBP1-223ENST00000600552 STAG3L2P0CL84 134 aa11.8□□□□□ -0.52
SHKBP1-223ENST00000600552 STAG3L3P0CL85 134 aa11.8□□□□□ -0.52
SHKBP1-223ENST00000600552 RHOHQ15669 191 aa11.8□□□□□ -0.52
SHKBP1-223ENST00000600552 SMUG1Q53HV7 270 aa11.8□□□□□ -0.52
SHKBP1-223ENST00000600552 ATP6V0CP27449 155 aa11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 TIRAPP58753 221 aa11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 FLI1Q01543 452 aaPredicted RBP11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 LINC01556Q5JQF7 62 aa11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 ZNF506Q5JVG8 444 aa11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 EPDR1Q9UM22 224 aa11.79□□□□□ -0.52
SHKBP1-223ENST00000600552 TRAV34A0A0B4J273 112 aa11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 SERTM2A0A1B0GWG4 89 aa11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 IBA57-AS1B1ANH7 110 aa11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 S100A4P26447 101 aaKnown RBP11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 LGALSLQ3ZCW2 172 aaPredicted RBP11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 ATP6V0E2Q8NHE4 81 aa11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 ACTR3CQ9C0K3 210 aaPredicted RBP11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 SH3BGRL3Q9H299 93 aa11.78□□□□□ -0.52
SHKBP1-223ENST00000600552 FAT1Q14517 4588 aa11.77□□□□□ -0.52
SHKBP1-223ENST00000600552 TRBV6-4A0A1B0GX49 114 aa11.77□□□□□ -0.53
SHKBP1-223ENST00000600552 LRCOL1A6NCL2 159 aa11.77□□□□□ -0.53
SHKBP1-223ENST00000600552 GAGE12JA6NER3 117 aa11.77□□□□□ -0.53
SHKBP1-223ENST00000600552 GAGE1Q13065 139 aa11.77□□□□□ -0.53
SHKBP1-223ENST00000600552 GAGE4Q13068 117 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms