RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LELP1Q5T871 98 aa4.01□□□□□ -1.77
VRK3-220ENST00000600259 SCXQ7RTU7 201 aa4.01□□□□□ -1.77
VRK3-220ENST00000600259 SLC25A29Q8N8R3 303 aa4.01□□□□□ -1.77
VRK3-220ENST00000600259 NPCDR1Q9BY65 106 aa4.01□□□□□ -1.77
VRK3-220ENST00000600259 SLC25A31Q9H0C2 315 aa4.01□□□□□ -1.77
VRK3-220ENST00000600259 GPN1Q9HCN4 374 aaPredicted RBP4.01□□□□□ -1.77
VRK3-220ENST00000600259 TRGV11A0A075B6L2 103 aa4□□□□□ -1.77
VRK3-220ENST00000600259 TRAV8-6A0A0B4J262 113 aa4□□□□□ -1.77
VRK3-220ENST00000600259 TRBV6-4A0A1B0GX49 114 aa4□□□□□ -1.77
VRK3-220ENST00000600259 RNF222A6NCQ9 220 aa4□□□□□ -1.77
VRK3-220ENST00000600259 DIRC3C9JPN6 131 aa4□□□□□ -1.77
VRK3-220ENST00000600259 LECT2O14960 151 aa4□□□□□ -1.77
VRK3-220ENST00000600259 RS1O15537 224 aa4□□□□□ -1.77
VRK3-220ENST00000600259 NOL3O60936 208 aaKnown RBP4□□□□□ -1.77
VRK3-220ENST00000600259 IGHV3-30P01768 117 aa4□□□□□ -1.77
VRK3-220ENST00000600259 IGHV3-33P01772 117 aa4□□□□□ -1.77
VRK3-220ENST00000600259 TYMSP04818 313 aa4□□□□□ -1.77
VRK3-220ENST00000600259 IGHV3-30-3P0DP02 117 aa4□□□□□ -1.77
VRK3-220ENST00000600259 IGHV3-30-5P0DP03 117 aa4□□□□□ -1.77
VRK3-220ENST00000600259 S100A5P33763 92 aa4□□□□□ -1.77
VRK3-220ENST00000600259 RANP62826 216 aaKnown RBP4□□□□□ -1.77
VRK3-220ENST00000600259 LAGE3Q14657 143 aa4□□□□□ -1.77
VRK3-220ENST00000600259 CFAP126Q5VTH2 177 aa4□□□□□ -1.77
VRK3-220ENST00000600259 FAM159AQ6UWV7 190 aa4□□□□□ -1.77
VRK3-220ENST00000600259 SYT8Q8NBV8 401 aa4□□□□□ -1.77
VRK3-220ENST00000600259 CIRBP-AS1Q8TBR5 109 aa4□□□□□ -1.77
VRK3-220ENST00000600259 TMED6Q8WW62 240 aa4□□□□□ -1.77
VRK3-220ENST00000600259 SEC22CQ9BRL7 303 aa4□□□□□ -1.77
VRK3-220ENST00000600259 PAXXQ9BUH6 204 aa4□□□□□ -1.77
VRK3-220ENST00000600259 CHAC1Q9BUX1 264 aa4□□□□□ -1.77
VRK3-220ENST00000600259 TM2D2Q9BX73 214 aa4□□□□□ -1.77
VRK3-220ENST00000600259 GTSF1LQ9H1H1 148 aa4□□□□□ -1.77
VRK3-220ENST00000600259 C11orf21Q9P2W6 132 aa4□□□□□ -1.77
VRK3-220ENST00000600259 Q9UF83 564 aa4□□□□□ -1.77
VRK3-220ENST00000600259 hCG_2014768A0A024R1R8 64 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 C5orf51A6NDU8 294 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 TCRBP04435 133 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 MT1HL1P0DM35 61 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 LINC00694P0DN24 101 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 IL7P13232 177 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 S100A1P23297 94 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 PPT1P50897 306 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 HNRNPA3P51991 378 aaKnown RBP3.99□□□□□ -1.77
VRK3-220ENST00000600259 HBG1P69891 147 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 HBG2P69892 147 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 NDUFA5Q16718 116 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 RGS21Q2M5E4 152 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 OR10J3Q5JRS4 329 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 SPANXN2Q5MJ10 180 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 DAZ4Q86SG3 579 aaKnown RBP3.99□□□□□ -1.77
VRK3-220ENST00000600259 ARL6IP6Q8N6S5 226 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 NHLRC2Q8NBF2 726 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 THAP6Q8TBB0 222 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 S100ZQ8WXG8 99 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 BAALCQ8WXS3 180 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 PTH2Q96A98 100 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 DNAJC30Q96LL9 226 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 DAZ3Q9NR90 486 aaKnown RBP3.99□□□□□ -1.77
VRK3-220ENST00000600259 PLA2G2DQ9UNK4 145 aa3.99□□□□□ -1.77
VRK3-220ENST00000600259 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 TRAV21A0A0B4J279 112 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 TMEM238LA0A1B0GVL6 79 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 PGPA6NDG6 321 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 PGPEP1LA6NFU8 196 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 FBLL1A6NHQ2 334 aaKnown RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 FAM25EA8MYX2 175 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 H0YIZ8 118 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 CIDEAO60543 219 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 EIF3GO75821 320 aaKnown RBP eCLIP3.98□□□□□ -1.77
VRK3-220ENST00000600259 PVALBP20472 110 aaPredicted RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 CSN1S1P47710 185 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 ZNF80P51504 273 aaPredicted RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 TRIQKQ629K1 86 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 STX12Q86Y82 276 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 OR5C1Q8NGR4 320 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 ATP6V0E2Q8NHE4 81 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 DAZAP1Q96EP5 407 aaKnown RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 C9orf85Q96MD7 179 aa3.98□□□□□ -1.77
VRK3-220ENST00000600259 WDR61Q9GZS3 305 aaKnown RBP3.98□□□□□ -1.77
VRK3-220ENST00000600259 LRP2P98164 4655 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 TRAV6A0A075B6T7 132 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 TRAV8-3A0A0A6YYJ7 113 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 TRAV8-1A0A0A6YYK1 113 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 IGHV3-73A0A0B4J1V6 119 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 CENPXA8MT69 81 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 LYRM1O43325 122 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 OR7C2O60412 319 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 IGLV2-8P01709 118 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 RNASE3P12724 160 aaKnown RBP3.97□□□□□ -1.77
VRK3-220ENST00000600259 INPP1P49441 399 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 S100A10P60903 97 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 ASAH1Q13510 395 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 RHOHQ15669 191 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 ZNF876PQ49A33 203 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 UFSP1Q6NVU6 142 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 KCNS1Q96KK3 526 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 LINC00479Q96M42 142 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 PRADC1Q9BSG0 188 aa3.97□□□□□ -1.77
VRK3-220ENST00000600259 MRPL18Q9H0U6 180 aaKnown RBP3.97□□□□□ -1.77
VRK3-220ENST00000600259 OTORQ9NRC9 128 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms